PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G325900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 357aa    MW: 40694.6 Da    PI: 9.602
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G325900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.5e-14453148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                        r+rW +eEd  l  +v+q+G++ W++++++m   + R +k+c +rw +yl
  Seita.3G325900.1.p  4 RQRWRPEEDAVLRAYVRQYGPREWHLVSQRMSvaLDRDAKSCLERWKNYL 53
                        89**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.089157IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-16256IPR009057Homeodomain-like
SMARTSM007173.8E-11355IPR001005SANT/Myb domain
CDDcd001672.88E-6653No hitNo description
SuperFamilySSF466893.63E-18684IPR009057Homeodomain-like
PfamPF139218.5E-12767No hitNo description
Gene3DG3DSA:1.10.10.607.4E-105787IPR009057Homeodomain-like
SMARTSM007175.958132IPR001005SANT/Myb domain
PROSITE profilePS512947.1355897IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MKERQRWRPE EDAVLRAYVR QYGPREWHLV SQRMSVALDR DAKSCLERWK NYLRPGIKKG  60
SLTDDEQRLV IRLQAKHGNK WKKIAAEWWE VFKEKQQREL RDSRRPPPEP SPDERGRYEW  120
LLENFAEKLV GERPPPPQPP PPLIMAGAPV LPPWLSSPNA AAVVAPPPRP PSPSVTLSLA  180
SAAVAPPPPA PAQWMPVERA AAEAAAAAYG FPSPQHAPPG PPPAPGMAVV EGQALAELAE  240
CCRELEEGQR AWAAHRREAA WRLKRVEQQL EMEREMRRRE VWEEFEAKMR TMRLEQAAAA  300
ERVEREHREK VAELRRDAQL KEEKMAEQWA AKHARVAKFL EQLGCSRPWS AATDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-11785782MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-11785782C-Myb DNA-Binding Domain
1msf_C4e-11785782C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G325900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1264890.0AF126489.1 Zea mays rough sheath2 protein (rs2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700337.10.0LOW QUALITY PROTEIN: protein rough sheath 2
SwissprotQ9S7B21e-163RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A368QN950.0A0A368QN95_SETIT; Uncharacterized protein
STRINGSb08g018840.11e-162(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.11e-55MYB family protein