PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G140700.1.p
Common NameLOC101755376, SETIT_022388mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 374aa    MW: 39693.2 Da    PI: 9.1463
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G140700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1728.6e-23234296163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkre+rkq+NRe+ArrsR+RK+ae+eeL++ v++L+aeN++L++e+ +l++ ++kl+ e+
  Seita.3G140700.1.p 234 ERELKREKRKQSNRESARRSRLRKQAETEELATQVESLTAENTSLRSEIGRLTESSDKLRFEN 296
                         89********************************************************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-27192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1702.5E-19229294No hitNo description
PfamPF001703.5E-21234296IPR004827Basic-leucine zipper domain
SMARTSM003384.6E-24234298IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.162236299IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-12237292No hitNo description
CDDcd147026.92E-23239287No hitNo description
PROSITE patternPS000360241256IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAHDEAVATQ KTGNTASSPK DQPAPSPYPD WSTMQAYYGH GVLPPTYFAP AIAPGHPPPY  60
MWGPQPLMPH PFGTPYAAMY PHGAAYPHPL VPMVSNPLSV EQTKSANSKE KSSSKKLKEI  120
DRTAVSAGSG NSKRTMSSSE DYSAEGSSDV NDQKVNKTSR KRSLVDGPGA ETSEAAKLAN  180
TAILPHHCFP APVIKPSATN VANSRAMGAT ISPSPGVIVP PHTGGPTDLS IKDERELKRE  240
KRKQSNRESA RRSRLRKQAE TEELATQVES LTAENTSLRS EIGRLTESSD KLRFENSALM  300
VKLKDTAAPT PAEPSPNKAA TSSSSPGAAA AENFLSMIDS TNAPGVSRHT EHGEPKLRQL  360
LDSNPSTDVA AVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250256RRSRLRK
2250257RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G140700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336251e-171BT033625.1 Zea mays full-length cDNA clone ZM_BFc0117G20 mRNA, complete cds.
GenBankBT0627841e-171BT062784.1 Zea mays full-length cDNA clone ZM_BFb0346H09 mRNA, complete cds.
GenBankJX4699571e-171JX469957.1 Zea mays subsp. mays clone UT3219 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961173.10.0common plant regulatory factor 1
TrEMBLK3Z7680.0K3Z768_SETIT; Uncharacterized protein
STRINGSi022388m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.14e-46G-box binding factor 3