PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G444900.2.p
Common NameSETIT_030461mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 335aa    MW: 36994.9 Da    PI: 7.3977
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G444900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.8e-09280328146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                         r++W + E++ l+++v+++G+g+Wk I    +   + R+  ++k+++++
  Seita.2G444900.2.p 280 RKKWIEIEEKTLLEGVEKYGKGNWKDIKMAYPvifEERSTIDLKDKFRN 328
                         7899999****************************99**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.324275334IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-10277329IPR009057Homeodomain-like
SMARTSM007175.3E-6279332IPR001005SANT/Myb domain
PfamPF002493.1E-7280329IPR001005SANT/Myb domain
CDDcd116604.50E-19281331No hitNo description
SuperFamilySSF466893.51E-12282331IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPPLAAADAF LVLEFIAGNR RIPHAVFTAI LGSLPSSSPR TSPRLRKALV LRALHAALHP  60
EDASCSFTLL RKARRVLADP DAAACFPYQL SLAENEQEDG ARAAVADLKR LLDHEWANLP  120
PSTLELAADR LAGHRSLHAW AAADHANRTK LRLLVGESTE REILAKLMQD DNANNANEAD  180
VAQRNHEADP SKKSSEAGCA QEGTAEHQNA LIGGAQGVQL PEKSVPASKK RSLMERHPNA  240
STYEWDGLDD SNDDRPLGKR ELPPFERKPH PAPTCAHKVR KKWIEIEEKT LLEGVEKYGK  300
GNWKDIKMAY PVIFEERSTI DLKDKFRNME RLSA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G444900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958819.10.0telomeric repeat-binding factor 2
TrEMBLA0A368Q9Z00.0A0A368Q9Z0_SETIT; Uncharacterized protein
STRINGSi030461m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.16e-11TRF-like 5