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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.2G301300.1.p |
Common Name | LOC101785591, SETIT_032702mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
NAC |
Protein Properties |
Length: 219aa MW: 25361.5 Da PI: 8.7411 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.2G301300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 174.2 | 3.9e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
lppGfrFhPtdeelv++yLk+kv+g ++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd
Seita.2G301300.1.p 6 LPPGFRFHPTDEELVNYYLKRKVHGLSIEL-DIIPEVDLYKCEPWELAeKsLLPSRDPEWYFFGPRDRKYPNGCRTNRATQAGYWKSTGKD 95
79****************************.99**************84335556888********************************* PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++v +++ +g+kktLv+ykgrap+g +t+Wvmheyr+
Seita.2G301300.1.p 96 RRVNY-QNRPIGMKKTLVYYKGRAPQGLRTNWVMHEYRI 133
****9.999****************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MAPADLPPGF RFHPTDEELV NYYLKRKVHG LSIELDIIPE VDLYKCEPWE LAEKSLLPSR 60 DPEWYFFGPR DRKYPNGCRT NRATQAGYWK STGKDRRVNY QNRPIGMKKT LVYYKGRAPQ 120 GLRTNWVMHE YRIEESECEN TMGFQDSYAL CRVFKKNVAF GELQKQKQGE CSSSQAKEKQ 180 KHFTNVGDAG QSSGSNEHGK DNSWLQFISD DVWCNKTK*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 4e-55 | 6 | 156 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-55 | 6 | 156 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-55 | 6 | 156 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-55 | 6 | 156 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-55 | 6 | 156 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-55 | 6 | 156 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-55 | 6 | 156 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-55 | 6 | 156 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-55 | 6 | 156 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-55 | 6 | 156 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-55 | 6 | 156 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-55 | 6 | 156 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-55 | 6 | 156 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-55 | 6 | 156 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC137596 | 2e-86 | AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence. |
GenBank | AP005564 | 2e-86 | AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence. |
GenBank | AP014965 | 2e-86 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
GenBank | CP012617 | 2e-86 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |