PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G236300.1.p
Common NameSETIT_032496mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ZF-HD
Protein Properties Length: 282aa    MW: 29485.9 Da    PI: 7.7252
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G236300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.52.1e-3058110558
         ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                         rY+eClkNh + +GghavDGCgEfm++ geegt +al+CaAC+CHRnFHR+e+ 
  Seita.2G236300.1.p  58 RYRECLKNHVVGIGGHAVDGCGEFMAA-GEEGTLDALRCAACNCHRNFHRKESP 110
                         8*************************9.999********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2458111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-2858108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.2E-2858109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.10259108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.08E-21205279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-33207280IPR009057Homeodomain-like
TIGRFAMsTIGR015653.2E-26218274IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDFDDHDDGD EEMAPMPVSS SYETPAQAAG FGGGVAPPRP PGEPVPRAKA PGGGGGGRYR  60
ECLKNHVVGI GGHAVDGCGE FMAAGEEGTL DALRCAACNC HRNFHRKESP TAEGSPISPA  120
ALVAYGATPH HQFSPYYRTP AGYFHHHHGQ PLHMAAAAAA AAGHAPRPLA LPSTSHSGRD  180
EGDDLSGMAG PMSAMGPLSG MSLGGAGPSG SGGSGSGKKR FRTKFTQEQK DRMLAFAERV  240
GWRIQKHDEA AVQQFCDEVG VKRHVLKVWM HNNKHTLGKK P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-292192761875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G236300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957068.10.0zinc-finger homeodomain protein 1
SwissprotQ6YXH51e-139ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A368Q1X30.0A0A368Q1X3_SETIT; Uncharacterized protein
STRINGSi032496m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-57homeobox protein 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]