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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.2G203800.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
NAC |
| Protein Properties |
Length: 400aa MW: 44754.3 Da PI: 6.6212 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.2G203800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.4 | 1.1e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
l pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++
Seita.2G203800.1.p 14 LLPGFRFHPTDEELVGFYLKRKIQQKPLSI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTVAGFWKATGTDRP 103
579***************************.89***************9888999************************************ PP
NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
++s+ +++ +glkk+Lvfykgra kg ktdW+mheyr+
Seita.2G203800.1.p 104 IYSSeGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEYRM 141
***956667***************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 400 aa
Download sequence Send
to blast |
MDERADMDKS DEVLLPGFRF HPTDEELVGF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP 60
KLASTGEKEW YFYCPRDRKY RNSARPNRVT VAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120
FYKGRAAKGI KTDWMMHEYR MPSLSDPSIP KTPKDKSIPA NDAWSICRIF KKPSSVAQRV 180
SSHSWGPQSI ATTTPELLSA LQSIQASHFA LESSSCSANQ FNSQQCFQGR QQQKLNSSQD 240
GSSCKVINFN RSLSLPQLSE KDTHSSPIIL PFETQSLEKS SAVTSVLLSM APEIVSSMNE 300
ALPNTEMEQL EPSYGYTDDW GIDANGAIGD KDDDPYTRKP VHVHSSGTEC GIPRKIKFPF 360
DLGVDSPDDW TSSIPCDSLP CPPPPTEMSN SSSTEKYYA*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-52 | 14 | 178 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-52 | 14 | 178 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-52 | 14 | 178 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-52 | 14 | 178 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-52 | 14 | 178 | 20 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 2e-52 | 14 | 178 | 20 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 2e-52 | 14 | 178 | 20 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 2e-52 | 14 | 178 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 2e-52 | 14 | 178 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 2e-52 | 14 | 178 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 2e-52 | 14 | 178 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 2e-52 | 14 | 178 | 20 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-52 | 14 | 178 | 17 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-52 | 14 | 178 | 17 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005397 | 2e-35 | AP005397.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0643D11. |
| GenBank | AP014965 | 2e-35 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
