PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G261300.1.p
Common NameLOC101758417, SETIT_020018mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 341aa    MW: 35132 Da    PI: 6.5024
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G261300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05526223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        +C+ C ++F ++  L  H+r+H
  Seita.1G261300.1.p  5 TCKQCYRRFASPRALAGHMRSH 26
                        7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.033426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64427IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-5526No hitNo description
PfamPF139121.7E-5527IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-5183207No hitNo description
SMARTSM00355110188208IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-8188212IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85256278IPR007087Zinc finger, C2H2
SMARTSM003553.8256278IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-11256278IPR007087Zinc finger, C2H2
PROSITE patternPS000280258278IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAKTTCKQCY RRFASPRALA GHMRSHSIAA AQAAAAADAA AAAAVKQQIS SASSASTSFA  60
AADEDSGFKM PASTYGLREN PKRSLRVADA AFSDHESEAE STPPHAKRVN AAAAWGEAEP  120
VSSLSEVATP EEDVALSLMM LSRDSWPSGA FDGDDYSDDG SDDGYAPPAP LPPARAPARA  180
PVEKRTQFQC VACKKVFRSY QALGGHRASN VRGGRGGCCA PPVAPPPPPQ PQPPVPLPFP  240
EHHDGDGDMD AKQQPRECPH CYRVFASGQA LGGHKRSHVC GAAAAQASTA TATATAAAST  300
SSAAPPSPIN NPGMIDLNVA PPSEEVELSA VSDPRFNPVA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G261300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953363.10.0zinc finger protein ZAT1
TrEMBLK3Z0F40.0K3Z0F4_SETIT; Uncharacterized protein
STRINGSi020018m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-23C2H2-like zinc finger protein