PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G253700.1.p
Common NameLOC101764633, SETIT_018237mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 237aa    MW: 26468.2 Da    PI: 5.3802
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G253700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.2e-1848101456
                         -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Seita.1G253700.1.p  48 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 101
                         458**************8899********************************9 PP
2HD-ZIP_I/II122.32.5e-3946139193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L+++
  Seita.1G253700.1.p  46 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRAQYDALHARVESLRQEKVALATQ 136
                         69*****************9999******************************************************************99 PP

         HD-ZIP_I/II  91 lke 93 
                         l+e
  Seita.1G253700.1.p 137 LDE 139
                         976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1826105IPR009057Homeodomain-like
PROSITE profilePS5007117.21642103IPR001356Homeobox domain
SMARTSM003894.7E-1745107IPR001356Homeobox domain
PfamPF000461.3E-1548101IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.3E-1948110IPR009057Homeodomain-like
CDDcd000869.68E-1651104No hitNo description
PRINTSPR000315.6E-77483IPR000047Helix-turn-helix motif
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PRINTSPR000315.6E-78399IPR000047Helix-turn-helix motif
PfamPF021831.9E-15103144IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MERDCQFMVV PPRHPYEDGG GHFMHHQLMV AGDHDPAGAG RGGGGERKRR FTEEQVRSLE  60
TTFHARRAKL EPREKAELAR ELGLQPRQVA IWFQNKRARW RSKQLEHDYA ALRAQYDALH  120
ARVESLRQEK VALATQLDEL KGRLNGRQDQ QQQSGSCEVN GAEAADDRRN TNSASCVVED  180
DGAVTPAVDV SEESAAAATA EYCYDDHVAY GGLPDPFCTT PDLWDTWPLL EWNAVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G253700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636851e-132AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankAK2876041e-132AK287604.1 Oryza sativa Japonica Group cDNA, clone: J065054D22, full insert sequence.
GenBankEU8475151e-132EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953290.11e-176homeobox-leucine zipper protein HOX24
SwissprotA2X7U13e-91HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLK3YVE11e-175K3YVE1_SETIT; Uncharacterized protein
STRINGSi018237m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.17e-33homeobox 7