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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.1G251900.1.p |
| Common Name | LOC101756124, SETIT_017679mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
NAC |
| Protein Properties |
Length: 348aa MW: 39117.9 Da PI: 6.6114 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.1G251900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 180.6 | 3.9e-56 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPtdeelv++yL+kkv+++k++l +vik+vd+yk+ePwdL++ k+ e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+
Seita.1G251900.1.p 8 VPPGFRFHPTDEELVDYYLRKKVASNKIDL-DVIKDVDLYKIEPWDLQEkcKIGMeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGR 97
69****************************.9***************952433333556******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
dk++++ k+ lvg++ktLvfy+grap+g+k+dW+mheyrle
Seita.1G251900.1.p 98 DKPIYT-KNCLVGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 137
******.999*****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048759 | Biological Process | xylem vessel member cell differentiation |
| GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MDTAFSHVPP GFRFHPTDEE LVDYYLRKKV ASNKIDLDVI KDVDLYKIEP WDLQEKCKIG 60
MEEQNEWYFF SHKDKKYPTG TRTNRATTAG FWKATGRDKP IYTKNCLVGM RKTLVFYRGR 120
APNGQKSDWI MHEYRLETTE NGTAPEEGWV VCRVFKKRVA TVRRMADGAP CWFDDHVAGF 180
MPPDIGSPRQ LMMHHHHHPT AAAYGGQQLY HCKPELEYHH LLPSQEAFLQ QLPQLESPKP 240
PGAYIAQGSC SLQSSDEASK YAAALQAPME PASYMAATGD DDSVTDWRVL DKFVASQLFS 300
HGDGAPKEAG YSNPAQVFHA EHKQPQEALD YASTSASGGG GEADLWK*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-50 | 8 | 158 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-50 | 8 | 158 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-50 | 8 | 158 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-50 | 8 | 158 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-50 | 8 | 158 | 17 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 2e-50 | 8 | 158 | 17 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT075093 | 0.0 | KT075093.1 Panicum virgatum secondary wall NAC master switch (SWN8B) mRNA, complete cds. |
