PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G088500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GeBP | ||||||||
Protein Properties | Length: 384aa MW: 41581.3 Da PI: 10.0341 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 30.7 | 8.4e-10 | 74 | 166 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 + r w +Dei+lL ++ + ++k+g ps + a + + + + s ++++ ++r L+ ++ + v ++++g k++d i++lsk Seita.1G088500.1.p 74 PVRSWLASDEIALLEAVSEHRQKHGRLPSPNHLAAALRSRLRAKDRLSADEISRRLRALRSRYDNAVLRMSRGTI--PVKDDDVTIYKLSK 162 6799*********************9999977777777777788899**********************777766..5689999******* PP DUF573 94 kiWg 97 iW+ Seita.1G088500.1.p 163 LIWE 166 ***7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.8E-15 | 75 | 166 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MGIPNFQILA SPLSTASSDD TTTTNVSDEH LSPPSSPSIS FDSVSESDAS TSSSVASDGS 60 SGSEPVVSKK PRLPVRSWLA SDEIALLEAV SEHRQKHGRL PSPNHLAAAL RSRLRAKDRL 120 SADEISRRLR ALRSRYDNAV LRMSRGTIPV KDDDVTIYKL SKLIWEGTRK GKREKKTRAA 180 DMRKDPREFG ELTGLYPCLS AEVEAIDTGS GAAAAGLLKR AFERIGDDTA ARLEAKVKMQ 240 RVAEARASAK LDQLRTNVAK KVDWLSFPSS PLAATEATAE TPPPSCSVLT AWRPRVTAVR 300 PRQAAVVFQA PPMLVIVLGI QIPCTWNQGV GAYGVGLKLR EPAWCLPCCD DLIMGWSRGL 360 RYIANSQQHG VPLNQGNLQR AHS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G088500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951891.1 | 0.0 | probable transcription factor At1g11510 | ||||
TrEMBL | A0A368PI83 | 0.0 | A0A368PI83_SETIT; Uncharacterized protein | ||||
STRING | Si017150m | 1e-178 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14023 | 5 | 5 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G088500.1.p |