PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G088500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 384aa    MW: 41581.3 Da    PI: 10.0341
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G088500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.78.4e-1074166397
              DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                         + r w  +Dei+lL ++ + ++k+g  ps +  a     + + + + s ++++ ++r L+ ++ + v ++++g      k++d  i++lsk
  Seita.1G088500.1.p  74 PVRSWLASDEIALLEAVSEHRQKHGRLPSPNHLAAALRSRLRAKDRLSADEISRRLRALRSRYDNAVLRMSRGTI--PVKDDDVTIYKLSK 162
                         6799*********************9999977777777777788899**********************777766..5689999******* PP

              DUF573  94 kiWg 97 
                          iW+
  Seita.1G088500.1.p 163 LIWE 166
                         ***7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-1575166IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGIPNFQILA SPLSTASSDD TTTTNVSDEH LSPPSSPSIS FDSVSESDAS TSSSVASDGS  60
SGSEPVVSKK PRLPVRSWLA SDEIALLEAV SEHRQKHGRL PSPNHLAAAL RSRLRAKDRL  120
SADEISRRLR ALRSRYDNAV LRMSRGTIPV KDDDVTIYKL SKLIWEGTRK GKREKKTRAA  180
DMRKDPREFG ELTGLYPCLS AEVEAIDTGS GAAAAGLLKR AFERIGDDTA ARLEAKVKMQ  240
RVAEARASAK LDQLRTNVAK KVDWLSFPSS PLAATEATAE TPPPSCSVLT AWRPRVTAVR  300
PRQAAVVFQA PPMLVIVLGI QIPCTWNQGV GAYGVGLKLR EPAWCLPCCD DLIMGWSRGL  360
RYIANSQQHG VPLNQGNLQR AHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G088500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951891.10.0probable transcription factor At1g11510
TrEMBLA0A368PI830.0A0A368PI83_SETIT; Uncharacterized protein
STRINGSi017150m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1402355