PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.4138s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 341aa    MW: 38086.8 Da    PI: 7.4482
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.4138s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-181360148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg W++eEde+lv++++ +G g+W+++++  g++R++k+c++rw +yl
  SapurV1A.4138s0010.1.p 13 RGLWSPEEDEKLVNYITTHGHGSWSSVPKFAGLKRCGKSCRLRWINYL 60
                            788*******************************************97 PP
2Myb_DNA-binding55.11.8e-1766109146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg++++eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  SapurV1A.4138s0010.1.p  66 RGSFSAEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                             899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-26563IPR009057Homeodomain-like
PROSITE profilePS5129418.261860IPR017930Myb domain
SuperFamilySSF466895.99E-3010107IPR009057Homeodomain-like
SMARTSM007176.2E-141262IPR001005SANT/Myb domain
PfamPF002493.0E-161360IPR001005SANT/Myb domain
CDDcd001671.13E-111660No hitNo description
PROSITE profilePS5129426.47161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2564115IPR009057Homeodomain-like
SMARTSM007171.5E-1665113IPR001005SANT/Myb domain
PfamPF002499.1E-1666109IPR001005SANT/Myb domain
CDDcd001671.39E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGHRCCNKQK VKRGLWSPEE DEKLVNYITT HGHGSWSSVP KFAGLKRCGK SCRLRWINYL  60
RPELKRGSFS AEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMAQGL  120
DPKTHNLIPS NQRAAHKAAC NVSQSSQQPF SIINLDSKMK DYSMEINPPI LTLPSPYPSS  180
NSTQPPLLQT ATSLPLPASS YQNTSVIWNE NAQNPQNSSI FPCLSSIDQN TLISSSSSTS  240
VNPTGFGLLN ENSFWRSNNN IGEPFDAAKI FEVMQSQGQE NQPNKICDTQ MIIDNAKGVH  300
DNMDASFDTT SYDLEFVDST LLPGSMCRDL SSMDDLAWNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.4138s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462561.10.0transcription factor MYB86
TrEMBLA0A3N7FG290.0A0A3N7FG29_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18170.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.17e-89myb domain protein 67