PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3355s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 28455.4 Da PI: 6.0661 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.8 | 3e-11 | 57 | 100 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er RR+++ +++ Lr +Pk + Kl+Ka++ + A++YI++Lq SapurV1A.3355s0020.1.p 57 VSERSRRKKLSDKLLALRAAVPKiS------KLDKASVIKDAIKYIQDLQ 100 57*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-15 | 41 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.354 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.19E-10 | 53 | 104 | No hit | No description |
SMART | SM00353 | 5.4E-12 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-14 | 56 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-9 | 57 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDVIDNHLDY QNYWETALFW NEDLDYSWET NQQFSVGNTD SSSPDENTQK IASKNIVSER 60 SRRKKLSDKL LALRAAVPKI SKLDKASVIK DAIKYIQDLQ EQERILQADI RELESRRLET 120 NHTRDIEDEL PVLLRSKRTK YDQVYDHWMA RSACPIQVHE LSVTSMGEKT LFVSLTCSKT 180 ADAMIRICEV FESLKLKIIT ANITALSGMV KKTVLLEVDE EEKEHLKSKI ERGVSALRSA 240 YNPMMGI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3355s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ363186 | 0.0 | KJ363186.1 Populus euphratica bHLH35 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001291248.1 | 1e-158 | transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 7e-70 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A075TDQ2 | 1e-157 | A0A075TDQ2_POPEU; BHLH35 protein | ||||
STRING | POPTR_0018s13850.1 | 1e-135 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 2e-72 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3355s0020.1.p |