PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3101s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 302aa    MW: 33562.7 Da    PI: 8.8707
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3101s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.32.3e-34602001128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                             lp+G++F+Ptd+el+ e+L+ kv++++      ++  e+i+++d    i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+
  SapurV1A.3101s0030.1.p  60 LPAGVKFDPTDQELL-EHLEGKVKADSrkvhplID--EFIPTIDgengICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRK 142
                             799************.99******99956643322..23444444445**********.555555677******************7 PP

                     NAM  78 ....tk..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                 t+  + +W++tgk+++vl+ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  SapurV1A.3101s0030.1.p 143 vhtdTEggETRWHKTGKTRPVLA-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 200
                             45553344667************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-3955219IPR003441NAC domain
PROSITE profilePS5100534.30660219IPR003441NAC domain
PfamPF023654.9E-1661200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTWCNDCNDV QTIETSSPPP ACNAGVLAQR HKECLSRSCP SCGHQIKSQD QAGIHDLPGL  60
PAGVKFDPTD QELLEHLEGK VKADSRKVHP LIDEFIPTID GENGICYTHP EKLPGVSKDG  120
LIRHFFHRPS KAYTTGTRKR RKVHTDTEGG ETRWHKTGKT RPVLAGGKVK GYKKILVLYT  180
NYGKQRKPEK TNWVMHQYHL GNNEEEKDGE LVVSKVFYQT QPRQCGSLVK DSVSVPSKFK  240
VQSSGHDQGS NLKNSTTLVD YYHPSSFISF DQSGQNRSAN PNPPQQLPPH FAVHDGSSFI  300
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-126020015140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3101s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707930.0AB970793.1 Populus nigra PniNAC122 mRNA for NAC transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444706.10.0NAC domain-containing protein 73
RefseqXP_024444707.10.0NAC domain-containing protein 73
SwissprotO494591e-133NAC73_ARATH; NAC domain-containing protein 73
TrEMBLB9MYC70.0B9MYC7_POPTR; NAC family protein
STRINGPOPTR_0017s04800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-135NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]