PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3085s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 249aa    MW: 28084.1 Da    PI: 6.7256
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3085s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.21.1e-881247127373
                    GRAS 127 aLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlh 211
                             +LlqaLa+Rp+g+p++RiTg+++p s+  + + le+++ rL+ + +++++p+ef+  v     d++ e+L+v+pgEalaVn+ lqlh
  SapurV1A.3085s0020.1.p   1 SLLQALAARPGGAPHVRITGIDDPVSKyaRGDGLEAVAGRLSAISDKFNIPVEFHG-VPVFAPDVTKETLDVRPGEALAVNFPLQLH 86 
                             79**********************999999**************************.6888999*********************** PP

                    GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                             +++desv+++++rd +L+++ks +Pkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr+ +eri+vE+++l+r+ vnv+
  SapurV1A.3085s0020.1.p  87 HTPDESVDVNNPRDGLLRMIKSFNPKVVTLVEQESNTNTTPFVTRFVETLNYYLAMFESIDVTLPRDRKERISVEQHCLARDMVNVI 173
                             *************************************************************************************** PP

                    GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                             aceg+er+erhe ++kW++r+++aGF+++pls+++++ +++llr+++ + y++ e++++++lgWkdr+L+s+SaW
  SapurV1A.3085s0020.1.p 174 ACEGKERVERHELFRKWKSRFMMAGFEQYPLSSYVNSVIRSLLRTYS-EHYTLVEKDEAMLLGWKDRSLISASAW 247
                             ***********************************************.55************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.1581229IPR005202Transcription factor GRAS
PfamPF035143.8E-861247IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
SLLQALAARP GGAPHVRITG IDDPVSKYAR GDGLEAVAGR LSAISDKFNI PVEFHGVPVF  60
APDVTKETLD VRPGEALAVN FPLQLHHTPD ESVDVNNPRD GLLRMIKSFN PKVVTLVEQE  120
SNTNTTPFVT RFVETLNYYL AMFESIDVTL PRDRKERISV EQHCLARDMV NVIACEGKER  180
VERHELFRKW KSRFMMAGFE QYPLSSYVNS VIRSLLRTYS EHYTLVEKDE AMLLGWKDRS  240
LISASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-411248126375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3085s0020.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016013.11e-176PREDICTED: scarecrow-like protein 21
RefseqXP_011048259.11e-176PREDICTED: scarecrow-like protein 21
SwissprotQ69VG11e-133CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2K2CBZ31e-173A0A2K2CBZ3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s44090.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3880022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-114GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]