PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1854s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NF-YC | ||||||||
Protein Properties | Length: 242aa MW: 27931.3 Da PI: 8.1449 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 67.4 | 2.5e-21 | 98 | 165 | 26 | 91 |
NF-YC 26 ikkilkadedv..kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 +k i+ + ++ + ae+P+l++kacelfileltlr+wl++ +krrtl+++ i+ av + + SapurV1A.1854s0040.1.p 98 VKTIMIYKSKIftVLVIAETPILFAKACELFILELTLRAWLQTTACKRRTLQRCHISRAVREEGMLRN 165 56677666655115678*******************************************98776654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.02E-16 | 11 | 163 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.6E-22 | 61 | 158 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-7 | 105 | 157 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MNLNQSIEFD QATADPSPQE DGKAMPMNPS MLPHHQITTK ERREQNLDQF WNQQLLEIYN 60 STASKSSHLL PLARIKRVIK SDGEVKPNQL RQKWKVVVKT IMIYKSKIFT VLVIAETPIL 120 FAKACELFIL ELTLRAWLQT TACKRRTLQR CHISRAVREE GMLRNVLNRV VLCDHDKEDD 180 VATECLEEME SLHNMQTPFP FFDLKGEVMA DRHREEPRQL MIKPPMPSSD FTPGCSSKWA 240 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_C | 4e-17 | 47 | 170 | 19 | 117 | HapE |
4g92_C | 4e-17 | 47 | 170 | 19 | 117 | HapE |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1854s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024444106.1 | 1e-104 | nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A2K1X6V1 | 1e-103 | A0A2K1X6V1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s15090.1 | 2e-70 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14399 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-22 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1854s0040.1.p |