PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1660s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 390aa MW: 43660.6 Da PI: 8.4921 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 121 | 166 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+ + gR++k+c++rw++ SapurV1A.1660s0020.1.p 121 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 166 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 173 | 216 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+++l+ a++++G++ W+ Iar ++ gRt++ +k++w+ SapurV1A.1660s0020.1.p 173 RRAFTEEEEDRLLTAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 216 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.784 | 116 | 167 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 120 | 169 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.91E-28 | 121 | 214 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-16 | 121 | 166 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-26 | 122 | 174 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-13 | 124 | 165 | No hit | No description |
PROSITE profile | PS51294 | 26.763 | 168 | 222 | IPR017930 | Myb domain |
SMART | SM00717 | 7.3E-15 | 172 | 220 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 173 | 215 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.09E-12 | 175 | 215 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 175 | 221 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0071367 | Biological Process | cellular response to brassinosteroid stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MSLQHLMSDK HVFNGYEDMN FLPPTPLPAS QLSLSHAFGV MGQPREIKTS NPQMGFQILS 60 HSMDQDRKPW SIQQLESWGA QRPGDVNFGV QKTSLSLNSR QQEEPQTSVH GRNGHTKLCA 120 RGHWRPAEDA KLKELVAQYG PQNWNLIAEN LEGRSGKSCR LRWFNQLDPR INRRAFTEEE 180 EDRLLTAHRL YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR KHRENSSIYR RRKPPSSSQI 240 FPIGSVDVTL QNNACSESTT ISSTIDESGS TCTDLSLTPS STKVPPRLFT RFSPQGDHRG 300 SSVDKEVTMR NVDFDKFCGS DNGVVVRGVD QSAQSDSNSE DSATESVGTT RANPYLSGDN 360 ENRNEKINMP FIDFLGVGAA SDKLGFRLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-33 | 121 | 221 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00516 | DAP | Transfer from AT5G17800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1660s0020.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148209 | 1e-159 | EF148209.1 Populus trichocarpa clone WS0128_M01 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011047039.1 | 0.0 | PREDICTED: uncharacterized protein LOC105141503 | ||||
Swissprot | Q5NBM8 | 6e-76 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A1L6K556 | 0.0 | A0A1L6K556_POPTO; Uncharacterized protein | ||||
STRING | POPTR_0013s06320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 8e-73 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1660s0020.1.p |