PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1574s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 428aa    MW: 48320.7 Da    PI: 7.9565
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1574s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.33.2e-121294263373
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal........ 81 
                             +lL++cA+ +s++d ++a++lL+ l   +sp+gd+++Rl+  f++AL+ rl+r++  ++ a  p   s   + +++ ++        
  SapurV1A.1574s0010.1.p  29 QLLVTCADLISQSDYSAAKRLLSVLFSDSSPYGDSVERLVYQFVRALSLRLNRHGIPTSTAPVPGVFS---VNRSIVSTcppcgtnn 112
                             89***************************************************666666666666665...3333333456688888 PP

                    GRAS  82 ..................klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiT 145
                                                 +++++P+++fshltaNqaIlea+ g  +++HiiDfdi++G+QWp+L+qaLa+R+    ++pp+lRiT
  SapurV1A.1574s0010.1.p 113 ykmlscydsdqetlrscyLSLNQITPFIRFSHLTANQAILEAIRGGqKAIHIIDFDIMHGVQWPPLMQALADRSsntlHPPPMLRIT 199
                             88888889999888765334***********************9876999************************877778******* PP

                    GRAS 146 gvgspesgskeeleetgerLakfAeelgvpfefnvl..vakrledl...eleeLrvkpgEalaVnlvlqlhrlldesvsleserdev 227
                             g g+    + + l++tg+rL kfA++lg++f+f++l  + ++l++l    ++++ + p+EalaVn+vl lhr+l+++         +
  SapurV1A.1574s0010.1.p 200 GTGH----DLNILHRTGDRLLKFAQSLGLRFQFHPLllLDNDLTSLalhLPSAITLLPDEALAVNCVLYLHRFLKDDSREL---LLF 279
                             ****....9**************************97633455555222578899999****************6555444...59* PP

                    GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                             L+ +k l+P+vv+++e+ea+hn++ Fl+rfleal++y alfdslea+lp++s+er  vE+ ++grei+++va+eg+ rrerh+++e+
  SapurV1A.1574s0010.1.p 280 LHKIKALNPTVVTIAEREANHNQPLFLQRFLEALDHYKALFDSLEATLPPKSRERLAVEQIWFGREIMDIVAAEGEGRRERHQKFET 366
                             *************************************************************************************** PP

                    GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                             W+++l+++GF++vpls +a +qaklllr ++ s+gy+++  ++s++lgW++++L+s+S+W
  SapurV1A.1574s0010.1.p 367 WEMMLKSVGFNKVPLSPFALAQAKLLLRLHYpSEGYQLQILKNSFFLGWQNHSLFSISSW 426
                             ************************************************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.1291406IPR005202Transcription factor GRAS
PfamPF035141.1E-11829426IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MLGSLSQLMS SSSSHVQDQE VPRPQTAFQL LVTCADLISQ SDYSAAKRLL SVLFSDSSPY  60
GDSVERLVYQ FVRALSLRLN RHGIPTSTAP VPGVFSVNRS IVSTCPPCGT NNYKMLSCYD  120
SDQETLRSCY LSLNQITPFI RFSHLTANQA ILEAIRGGQK AIHIIDFDIM HGVQWPPLMQ  180
ALADRSSNTL HPPPMLRITG TGHDLNILHR TGDRLLKFAQ SLGLRFQFHP LLLLDNDLTS  240
LALHLPSAIT LLPDEALAVN CVLYLHRFLK DDSRELLLFL HKIKALNPTV VTIAEREANH  300
NQPLFLQRFL EALDHYKALF DSLEATLPPK SRERLAVEQI WFGREIMDIV AAEGEGRRER  360
HQKFETWEMM LKSVGFNKVP LSPFALAQAK LLLRLHYPSE GYQLQILKNS FFLGWQNHSL  420
FSISSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-61284275375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1574s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090440.0AC209044.1 Populus trichocarpa clone POP057-J01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321384.10.0scarecrow-like protein 18
SwissprotQ9ZWC51e-138SCL18_ARATH; Scarecrow-like protein 18
TrEMBLB9IDL70.0B9IDL7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-136GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]