PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1446s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 109aa    MW: 12623.6 Da    PI: 10.246
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1446s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.48.2e-1115901389
                            TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                            ++r+vl+ + ++ +  g    +  l+++de+g++W++++++  ++ +r  l++ W  Fv++++Lk+gD++ + ld++++
  SapurV1A.1446s0080.1.p 15 ERRIVLSENLIKGFpRG---HEAYLKFKDEDGKVWTFRCRVpPGGISRPALSGDWFLFVRSKQLKVGDVIEIALDREKD 90
                            34567777777666422...3447***************88544445599********************999987654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.8681103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-142104IPR015300DNA-binding pseudobarrel domain
CDDcd100178.10E-12389No hitNo description
SuperFamilySSF1019361.06E-11489IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00285103IPR003340B3 DNA binding domain
PfamPF023622.0E-81690IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MEKIFTKKLN NIDIERRIVL SENLIKGFPR GHEAYLKFKD EDGKVWTFRC RVPPGGISRP  60
ALSGDWFLFV RSKQLKVGDV IEIALDREKD RSGVDQFTIR FKNQLEIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1446s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.15e-58PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AZU82e-55A0A2K2AZU8_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00440.14e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527