PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1209s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 463aa MW: 51166.1 Da PI: 5.4068 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.7 | 4.1e-13 | 257 | 303 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR+++N +++ Lr l+P++ K++ a+++ A++YIk+L SapurV1A.1209s0060.1.p 257 TKHFATERQRREHLNGKYDSLRNLVPNP-----SKNDRASVVGDAINYIKEL 303 68*************************9.....7****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.74E-15 | 253 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.32 | 254 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.63E-12 | 255 | 308 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 257 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 257 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-11 | 260 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MCEETACFEP NNSVVEGGDD DGFCQVLPFM TGSSTTNSFE ESLKISMEEF SNQYHQGESA 60 AASMEVIQLQ HQMAFNNNCH HLMEQYPTNH HQVLSYDHTS NWDPNFIQFQ EMHQVLDQNG 120 NFNASANTPS SMLPDLLSLF SLPRCTSTST LLPNSSISFT NPAHKTPSGF MGVDSTSVLF 180 DSNPLAPQFT ELVHSLPPHG YSLPAPLFGG GQGDDQVDGL SGGGLSYQDG GHGEGVFEFT 240 AEMACIGKGI RKTGKVTKHF ATERQRREHL NGKYDSLRNL VPNPSKNDRA SVVGDAINYI 300 KELLRTVEEL KLLVEKKRYG RERIKRHKTE EDGGVDVLEN SDMKIEQDQS AYNNGSLRSS 360 WLQRKSKHTE VDVRLIEDEV TIKLVQRKKV NCLLSVSKVL DELQLDLQHA AGGLIGDYHS 420 FLFNTKINEG SCVYASGIAN KLLEVVDRQY ASSTTVPAGS CF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1209s0060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308327.3 | 0.0 | transcription factor bHLH91 | ||||
TrEMBL | A0A2K2A576 | 0.0 | A0A2K2A576_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s21660.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3743 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 1e-85 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1209s0060.1.p |