PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.1128s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24282.8 Da PI: 9.0295 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.5 | 2.2e-20 | 17 | 60 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ri k qvtfskRr+g++KKA+ELS+LC++++a+i+fs+ +k SapurV1A.1128s0080.1.p 17 RICKKNHLQVTFSKRRAGLFKKASELSTLCGVDIAMIVFSPAQK 60 67778888********************************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.75E-25 | 8 | 81 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-30 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.31 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-16 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-22 | 17 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-16 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-16 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MVSEKPAMGR RKIKIERICK KNHLQVTFSK RRAGLFKKAS ELSTLCGVDI AMIVFSPAQK 60 DLSFGHPDVD SITRRFLSGS PSPPSSGLPQ LIETRRNANA HDQNVELTRI LDHIEAEKKY 120 GQVLDRMRRA DRSRCCWESP IEELELHELE QLRGALEELK KAVAKQVNNI LIEPTSSLPF 180 LAVNGGGEGG DFGTKMEVDN ASSAALHINN FGYARKIC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-16 | 8 | 94 | 1 | 87 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-16 | 8 | 94 | 1 | 87 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-16 | 8 | 94 | 1 | 87 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-16 | 8 | 94 | 1 | 87 | Myocyte-specific enhancer factor 2B |
6byy_A | 6e-16 | 8 | 94 | 1 | 87 | MEF2 CHIMERA |
6byy_B | 6e-16 | 8 | 94 | 1 | 87 | MEF2 CHIMERA |
6byy_C | 6e-16 | 8 | 94 | 1 | 87 | MEF2 CHIMERA |
6byy_D | 6e-16 | 8 | 94 | 1 | 87 | MEF2 CHIMERA |
6c9l_A | 5e-16 | 8 | 94 | 1 | 87 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-16 | 8 | 94 | 1 | 87 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-16 | 8 | 94 | 1 | 87 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-16 | 8 | 94 | 1 | 87 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-16 | 8 | 94 | 1 | 87 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-16 | 8 | 94 | 1 | 87 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.1128s0080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031765.1 | 1e-115 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | B9HLM7 | 2e-99 | B9HLM7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s04110.1 | 1e-100 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-35 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.1128s0080.1.p |