PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1124s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 346aa    MW: 38825.7 Da    PI: 6.5061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1124s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.8e-12142193155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h ++Er+RR+++N+ ++ Lr l+P++   +  + + a+i   A++++k+L+
  SapurV1A.1124s0170.1.p 142 QRMTHIAVERNRRKQMNEYLSVLRALMPES---YVHRGDQASIIGGAINFVKELE 193
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-13140197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-12140195No hitNo description
PROSITE profilePS5088814.811141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15141208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-7147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MALEAAVLQQ DWFGHGGKEL YSLLGGNWSY DFGLDQNEED HDNSCSSYFL ENQTETFLHE  60
DWNSFQPPNS MVPHLNDLHL TCSNIPSSSD ASIDAANGLL STAPPTSDHH HHHSGEPSAM  120
PATRVKRRRS RSKKNKEEIE NQRMTHIAVE RNRRKQMNEY LSVLRALMPE SYVHRGDQAS  180
IIGGAINFVK ELEQKMQVLG ACKKMKENSD GDSHQHVSSL PFSEFFTFPQ YSTSPVHFEN  240
SVGKNEKLLK TQSTIADIEV TMVESHASLK IRSKRLPKQL LKVVSGLHSM RLTVLHLNVT  300
TADQIVLYCL SVKVEDDCKL TSVDDIATAV YQMLGRIQED CVLSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142153RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1124s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156480.0AC215648.1 Populus trichocarpa clone POP036-O24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382653.10.0transcription factor bHLH94
SwissprotQ9C7T44e-77BH096_ARATH; Transcription factor bHLH96
TrEMBLU5GAK10.0U5GAK1_POPTR; BHLH family protein
STRINGPOPTR_0005s04160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]