PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1078s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 225aa MW: 25667.2 Da PI: 7.9193

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1078s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.1	5.5e-27	62	150	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYAk+ GF +r+ +s+ks+++g+i++r++ C+keg++ ++ ++ + + r+r+++r gC a++ vk+ek gkw vtk+ +HnH+ SapurV1A.1078s0020.1.p 62 FYDEYAKREGFLTRIVSSRKSEHDGTIISRRLACNKEGFNLSSPNTGQVKIRKRESKREGCMAMILVKREKPGKWLVTKFMRDHNHP 148 9*******************************************999************************************ PP FAR1 89 la 90 l+ SapurV1A.1078s0020.1.p 149 LV 150 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-24	62	150	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MNFISVELHL SAKPVEIETL VEDKIVTTES IVGGETGACE VDTSQEPYEG MVFESEKSAR 60 VFYDEYAKRE GFLTRIVSSR KSEHDGTIIS RRLACNKEGF NLSSPNTGQV KIRKRESKRE 120 GCMAMILVKR EKPGKWLVTK FMRDHNHPLV ISSKKGRPTP DEKDERIREL SSQLHHTNRQ 180 LAACREQLRT FMTYIEEHTM CMLKTVEGVV QNIREVESET RSSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1078s0020.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003632074.2	1e-117	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	2e-22	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	F6HYS1	1e-115	F6HYS1_VITVI; Uncharacterized protein
STRING	VIT_05s0102g00390.t01	1e-116	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	4e-58	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1078s0020.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]