PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1056s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-other
Protein Properties Length: 861aa    MW: 96047.6 Da    PI: 5.5437
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1056s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.23.6e-05726786154
                             TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                             +rkRt ++++q+  +e++   ++ +  +a++ +  ++kl     ++t +q k+W  Nr+a+
  SapurV1A.1056s0040.1.p 726 KRKRTIMNDYQIALMEKALLDEPEMqrNAAALQSWSDKLslngsEVTPSQLKNWLNNRKAR 786
                             79*****************997777225678999*****9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-4714789IPR009057Homeodomain-like
PROSITE profilePS500719.799723790IPR001356Homeobox domain
SMARTSM003895.4E-6725794IPR001356Homeobox domain
CDDcd000861.48E-5726789No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MRLAKEEPSM AEQVIDLISA VKELHGLSCQ ELNKLLRDSE NFTIHYHSEK GSTIKIDVEK  60
LAGFLPLHLI AVLMSSDRDE SLLRYLLCGI RLLHSLCDLA PRNSKLEQVL LDDVKVSEQL  120
LDLVFYLLIV LSGYRQENRI SCSLLLVHSA LVASSLHLLS GCISLQWQDL VQVLLAHPKV  180
DIFMDAAFGA VHVAIRFLQV KLSDQYTGLH VKSPTAEQIV NYICQQCEAS LQILLSLCQQ  240
KVFRERLLRN KELCGRGGVL SLAQAILNLN VTPPFVDSFT VVAAISRLKA KVLSILLHLC  300
EAESISYLDE VASSPGSLDL AKSVVLEILE LLKAALSKDP NYLSPCSDKT FPMGLLRLNA  360
MRLADIFSDD SNFRSFITTC FTKVMTAIFS LPREDFISIW CSSEFPPREE DATLEYDTFA  420
AAGWFLDTFA AANLSNAINL EITLLPSNMP QAMYAHQRTS LFVKLIANLH CFVPNICEEQ  480
ERNLFLHKFL ECMRMDPSKS LPGFSFTSGA QRAVTVCRNL RSLLSHAESL IPNFLNEDDV  540
QLLRVFFNQL QSLINPADFE ENKVQEIKSE RSVSLDKFSR LSIDEHLQEA QSTRASSSPM  600
MRKEPSSFNN RTDIQKEEMS ENSAIQEEEK HSFRNEHVNQ ANVMRGDKAK FGACASDVLR  660
EMDRDSHNVE TSGSDTSSTR GKSFVGQVVN GDLLKSSAHM KGSGCQGVHN GEKSESLHFE  720
EKQPRKRKRT IMNDYQIALM EKALLDEPEM QRNAAALQSW SDKLSLNGSE VTPSQLKNWL  780
NNRKARLARA GKDVRAPMEV DVTFPENQVG QALQHESPES PGEDNITSSV RGLQNTSEIG  840
VFEDPEAGIG LSDFVDIGAS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1721727KQPRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1056s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826651e-131AC182665.2 Populus trichocarpa clone Pop1-18D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451145.10.0nodulin homeobox isoform X3
TrEMBLA0A3N7ESX60.0A0A3N7ESX6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s22800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF386946