PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0950s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92391.6 Da    PI: 6.2111
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0950s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182179357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            k  ++t+eq+e+Le+l++ +++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  SapurV1A.0950s0040.1.p 21 KYVRYTPEQVEALERLYHDCPKPTSMRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 79
                            5679*****************************************************97 PP
2START179.61.8e-561663742205
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                             +aee ++++++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W +++++++++++ s+g
  SapurV1A.0950s0040.1.p 166 IAEESLAQFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCAGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVINAMSTG 251
                             78999*****************************************************.8888888888****************** PP

                             ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                   START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                               g ++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+   ++++vRae+lpSg+li+p+++g+s ++ v+h
  SapurV1A.0950s0040.1.p 252 ngGSIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppTQHFVRAEMLPSGYLIRPCEGGGSIIHLVDH 338
                             ***************************************************99999******************************* PP

                             EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                   START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                             +dl+ ++++++lr+l++s++  ++kt++a+l+++++
  SapurV1A.0950s0040.1.p 339 MDLEPWSVPEVLRPLYESSTLLAQKTTMAALRHLRQ 374
                             *******************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4831680IPR001356Homeobox domain
SMARTSM003896.8E-161884IPR001356Homeobox domain
CDDcd000862.88E-162181No hitNo description
SuperFamilySSF466892.48E-162182IPR009057Homeodomain-like
PfamPF000464.9E-162279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.4E-182379IPR009057Homeodomain-like
CDDcd146868.35E-673112No hitNo description
PROSITE profilePS5084825.927156384IPR002913START domain
CDDcd088754.97E-79160375No hitNo description
SuperFamilySSF559617.14E-38165377No hitNo description
SMARTSM002341.1E-42165375IPR002913START domain
Gene3DG3DSA:3.30.530.202.7E-23165371IPR023393START-like domain
PfamPF018524.9E-54166374IPR002913START domain
PfamPF086702.2E-51697837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MMGVSSTCKD GSTKIAMDNG KYVRYTPEQV EALERLYHDC PKPTSMRRQQ LIRECPILSH  60
IEPKQIKVWF QNRRCREKQR KESSRLQGVN RKLTAMNKLL MEENDRLQKQ VSQLVYENSY  120
FRQQPQNATN LATTDTSCES VVTSGQHHLT PQHPPRDASP AGLLSIAEES LAQFLSKATG  180
TAVEWVQMPG MKPGPDSIGI VAISHGCAGV AARACGLVGL EPTRVAEILK DRPSWFRDCR  240
AVDVINAMST GNGGSIELLY MQLYAPTTLA PARDFWLLRY TSVLEDGSLV VCERSLNNTQ  300
NGPSMPPTQH FVRAEMLPSG YLIRPCEGGG SIIHLVDHMD LEPWSVPEVL RPLYESSTLL  360
AQKTTMAALR HLRQISQEVS QPNVTSWGRR PAALRALSQR LSKGFNEAVN GFADEGWSLL  420
ESDGIDDVTV LVNSSPTKTM GVNFSYDNGF PSMSNAVLCA KASMLLQNVP PAILLRFLRE  480
HRSEWADSGI DAYAASAVKA GPCSLQVSRN FGGQLILPLA HTIENEEFME IIKLENMGYR  540
EGMLMPSDVF LLQLCSGVDE NVVGTSAELI FAPIDASFSD DAPIIPSGFR IIPLDSGMDA  600
SSPNRTLDLA SALEVGPAGN RTSGDLSGRS GCTKSVMTIA FQFAFEMHLQ ENVASMARQY  660
VRSIIASVQR VALALSPSHS GSHPGLWPPN GTPEAHTLAR WICESYRCYL GVKLFENEGS  720
DSILKTLWHH SDALMCCSLK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDNGRKTL  780
CSEFPQIMQQ GFMCLQGGIC LSSMGRQVSY ERAVAWKVLN EEESAHCICF MFINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0950s0040.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196220.0AY919622.1 Populus trichocarpa class III HD-Zip protein 7 (HB7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446215.10.0homeobox-leucine zipper protein ATHB-8 isoform X2
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A2K1WVS70.0A0A2K1WVS7_POPTR; HD-ZIP family protein
STRINGPOPTR_0018s08110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]