PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0916s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 348aa    MW: 39314.3 Da    PI: 9.0874
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0916s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.2e-172065147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            rg W + Ede+l ++v q+G+ +W+ Ia++++ gR++k+c++rw++ 
  SapurV1A.0916s0130.1.p 20 RGHWRPAEDEKLQQLVDQFGPQNWNFIAEHLQ-GRSGKSCRLRWYNQ 65
                            899*****************************.************96 PP
2Myb_DNA-binding49.11.4e-1573116247
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++T+eE+e+l++ ++  G++ W++Iar ++ gRt++ +k++++ +
  SapurV1A.0916s0130.1.p  73 RPFTEEEEERLLRSHRIQGNR-WASIARLFP-GRTDNAVKNHYHVV 116
                             69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.0311570IPR017930Myb domain
SuperFamilySSF466893.37E-2818113IPR009057Homeodomain-like
SMARTSM007172.2E-141968IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-262173IPR009057Homeodomain-like
CDDcd001671.53E-132364No hitNo description
PfamPF139211.8E-172383No hitNo description
SMARTSM007174.3E-1471119IPR001005SANT/Myb domain
PROSITE profilePS5129418.40171121IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-1974119IPR009057Homeodomain-like
CDDcd001674.17E-592117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEDFRGSSSS TDSGRTSCHR GHWRPAEDEK LQQLVDQFGP QNWNFIAEHL QGRSGKSCRL  60
RWYNQLDPNI NKRPFTEEEE ERLLRSHRIQ GNRWASIARL FPGRTDNAVK NHYHVVMARR  120
KRERCLTIHG KRSNFQVQYP SDHHHRNNSA TPDSVFGFFR PQGSPDFGSE LGFQNNIIER  180
TGNNIHMSSS NSSPSWTNIS ASTITNDSLS FDVFDAKRKD YIHSSSSSIY PKGGALPLNE  240
SVHCTSYHPS STTDGGNKYL NVVGRQNPNP KKVVPDNPFA FTSYGDGYGS NKEKIIESRL  300
VRLDRDHHDS AALWKLPMAS QQEQGDHGGQ IKNQDVVFID FLGVGIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-33201207107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0916s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707830.0AB970783.1 Populus tremula x Populus tremuloides PtxtMYB026 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306248.20.0transcription factor MYB97 isoform X1
TrEMBLA0A2I4KKW70.0A0A2I4KKW7_POPTR; MYB family protein
STRINGPOPTR_0005s06410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.13e-59myb domain protein 69