PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0904s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 612aa    MW: 67971.5 Da    PI: 6.9595
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0904s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.67.1e-063263401226
                             TS--TTTTT-SS-SS CS
                 zf-CCCH  12 tGtCkyGdrCkFaHg 26 
                             +G C++G++C+F H+
  SapurV1A.0904s0020.1.p 326 SGSCPRGEKCNFQHD 340
                             69************6 PP
2zf-CCCH185e-06351372526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              C +f+  G C +G+ C+F H+
  SapurV1A.0904s0020.1.p 351 VCIDFLIKGKCERGPDCNFKHD 372
                             5********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073806.69E-427235No hitNo description
PROSITE profilePS5010314.089314342IPR000571Zinc finger, CCCH-type
SMARTSM003560.2316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5318343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5318341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-5345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145346374IPR000571Zinc finger, CCCH-type
SMARTSM003560.016348373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4351373IPR000571Zinc finger, CCCH-type
PfamPF046771.6E-37391500IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541973.59E-7397494IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.101.7E-5398511IPR011146HIT-like domain
PfamPF046767.8E-17530608IPR006767Cwf19-like protein, C-terminal domain-2
Gene3DG3DSA:3.30.428.101.7E-5582604IPR011146HIT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MSPPRILLCG DVLGRLNQLF KRVQSVNKSA GPFDALFCVG QFFPDSAEQL EEFMGYVEGG  60
GGGNSQIPLP TYFIGDYGVA APKVLSTASR NSANLGFKMD GFKICDNLFW LRGSGKFTLH  120
GLSVVYLSGR QSSNGQQFGT YSQDDVDALR ALAEEPGVID LFLTNEWPSG VTNRASVSDI  180
PAGFLDSTGS DSSVSELVAE IKPRYHIAGT KGVFYAREPY SNVDAVHVTR FFGLAMVGNK  240
DKQKFIHAIS PTPASTMSAA EISMKPPNTT LSPYTLVVEQ TALKEVTKRS TDSVSDSQYW  300
RYDVSQKRHK SGAGEGNKLC FKFIYSGSCP RGEKCNFQHD SDAREQYSGG VCIDFLIKGK  360
CERGPDCNFK HDLQNEGESH SRTRRRSESD SGNRSKVCWF CLSSPNVESH LIISVGEFYY  420
CALPKGPLVQ DHVLVIPIEH APSTLTLSQQ SNSELVKFQN SLKLYYKNRG KEAVLFEWIS  480
KRSSHANIQV VPVPSSRAAA VRDICNMAAE KLGFKFVAMK FNNSSDGREW LRKQFDRNYS  540
FFYVELTEGT ILSHSVEENE NFPAQFGREV LAGLLNMPER ADWRNCALGK DEETKMAEEF  600
KKQFEELDPN Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U6e-13398584675862CWF19-like protein 2
6id1_U6e-13398584675862CWF19-like protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0904s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1878530.0AC187853.2 Populus trichocarpa clone Pop1-117C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460378.10.0zinc finger CCCH domain-containing protein 64 isoform X2
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A2K2A2U40.0A0A2K2A2U4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923