PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0868s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 527aa MW: 57413.6 Da PI: 8.253 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.3 | 5.1e-17 | 222 | 271 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lrel+P+ ++K +Ka+ L +++eY++ Lq SapurV1A.0868s0010.1.p 222 RSKHSATEQRRRSKINDRFQTLRELIPHG----DQKRDKASFLLEVIEYVQFLQ 271 889*************************7....7*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-25 | 217 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-19 | 218 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.844 | 220 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.63E-15 | 222 | 275 | No hit | No description |
Pfam | PF00010 | 1.9E-14 | 222 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-13 | 226 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
GGFLQTHDFL QPLERVSKAT ATEVEILTIE KPPPPAPPPS VEHILPGGIG TYSISHVSYF 60 NQRVPKPENA LFSVAQASST DKNDENSNCS SYSASGFTLW EESALKMGKT GKENVGERSN 120 IIREAAVKTG QWTTSERPSH SSSNNHRNSF SSLSSSHRPP GLKSTQSFIE MIQSAKGSTL 180 DDDLDDEETF LLKKETPSPI HKGELRVKID GKSNDQKPNT PRSKHSATEQ RRRSKINDRF 240 QTLRELIPHG DQKRDKASFL LEVIEYVQFL QEKVQKYEGS YQGWNHELAK LGPWRNNTRP 300 VESSIDQSRG VNSGVSPALL LAAKLDEKNI TISSSINPGG ARNPDESDTS SASTFNAMDH 360 QPGITNKAMP FPISLQPNLF NTGRIAGAAA QFQPRLAFDA ENTETEPQPH PQPWHAISCT 420 SDGAVASDKL KQQNLTVEGG TISISSAYSQ GLLNTLTQAL QSSGVDLSQA SVSVQIELGK 480 KGNSRQTAPT SIDNNVPPSN QGTMRSRFSS GEESNQALKK LKTSKR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0868s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024442672.1 | 0.0 | transcription factor BIM1 isoform X2 | ||||
Swissprot | Q9LEZ3 | 1e-110 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | A0A2K1XI27 | 0.0 | A0A2K1XI27_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s03550.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7252 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.5 | 1e-108 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0868s0010.1.p |
Publications ? help Back to Top | |||
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