PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0868s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 527aa    MW: 57413.6 Da    PI: 8.253
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0868s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.35.1e-17222271255
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r +h++ E+rRR++iN++f++Lrel+P+     ++K +Ka+ L +++eY++ Lq
  SapurV1A.0868s0010.1.p 222 RSKHSATEQRRRSKINDRFQTLRELIPHG----DQKRDKASFLLEVIEYVQFLQ 271
                             889*************************7....7*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-25217294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-19218291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.844220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-15222275No hitNo description
PfamPF000101.9E-14222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13226276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
GGFLQTHDFL QPLERVSKAT ATEVEILTIE KPPPPAPPPS VEHILPGGIG TYSISHVSYF  60
NQRVPKPENA LFSVAQASST DKNDENSNCS SYSASGFTLW EESALKMGKT GKENVGERSN  120
IIREAAVKTG QWTTSERPSH SSSNNHRNSF SSLSSSHRPP GLKSTQSFIE MIQSAKGSTL  180
DDDLDDEETF LLKKETPSPI HKGELRVKID GKSNDQKPNT PRSKHSATEQ RRRSKINDRF  240
QTLRELIPHG DQKRDKASFL LEVIEYVQFL QEKVQKYEGS YQGWNHELAK LGPWRNNTRP  300
VESSIDQSRG VNSGVSPALL LAAKLDEKNI TISSSINPGG ARNPDESDTS SASTFNAMDH  360
QPGITNKAMP FPISLQPNLF NTGRIAGAAA QFQPRLAFDA ENTETEPQPH PQPWHAISCT  420
SDGAVASDKL KQQNLTVEGG TISISSAYSQ GLLNTLTQAL QSSGVDLSQA SVSVQIELGK  480
KGNSRQTAPT SIDNNVPPSN QGTMRSRFSS GEESNQALKK LKTSKR*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0868s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442672.10.0transcription factor BIM1 isoform X2
SwissprotQ9LEZ31e-110BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A2K1XI270.0A0A2K1XI27_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.51e-108bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]