PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0846s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 37812.7 Da PI: 5.2296 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.6 | 1.2e-53 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelv +yL++kveg ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r+nrat++gyWka SapurV1A.0846s0080.1.p 6 LPPGFRFHPTDEELVGYYLQRKVEGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATHAGYWKA 91 79****************************.99**************95344555788***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd++v++ +++++ +ktLvfy+grap+g +tdWvmheyrl SapurV1A.0846s0080.1.p 92 TGKDRKVVC-QSAVTAYRKTLVFYRGRAPSGDRTDWVMHEYRL 133 *********.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-61 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.496 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-28 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 337 aa Download sequence Send to blast |
MGGASLPPGF RFHPTDEELV GYYLQRKVEG LEIELEVIPV IDLYKFDPWE LPEKSFLPKR 60 DMEWFFFCPR DRKYPNGSRT NRATHAGYWK ATGKDRKVVC QSAVTAYRKT LVFYRGRAPS 120 GDRTDWVMHE YRLSDGLSQG SPNFKGAFAL CRVVKKNEQG LKMSDPQGEP RTKKDGSSSS 180 NVDFTSNVVS NEPSNISSEI SSQASYLYSN GNQYSTPIAS PYQVTTMSGF EPAASLESNP 240 SSHWISPELI LDSSKDYPQV HEAASQYFPQ YEYPSSMNTW QPDTHGEFSP GSSYSNLTGE 300 IEPADDLSHI GFMSPYSEHG NYMGFGGNDD MHYQGY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-52 | 5 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-52 | 5 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-52 | 5 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-52 | 5 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-52 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-52 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-52 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-52 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-52 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-52 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-52 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-52 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-52 | 5 | 162 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-52 | 5 | 162 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0846s0080.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC775323 | 3e-43 | KC775323.1 Jatropha curcas NAC transcription factor 045 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453958.1 | 0.0 | NAC domain-containing protein 71 isoform X1 | ||||
Refseq | XP_024453959.1 | 0.0 | NAC domain-containing protein 71 isoform X1 | ||||
Swissprot | O49697 | 1e-106 | NAC71_ARATH; NAC domain-containing protein 71 | ||||
TrEMBL | A0A3N7G2I2 | 0.0 | A0A3N7G2I2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s08830.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6722 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17980.1 | 1e-108 | NAC domain containing protein 71 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0846s0080.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|