PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0834s0150.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 254aa MW: 29401 Da PI: 6.5111 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.5 | 4.4e-23 | 76 | 165 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY +Y++ +GF+vr++++++s+ n++++ ++fvCskeg+r+++ + +++ + + tr gC a++++ ++ gkw+vtk++++H+ SapurV1A.0834s0150.1.p 76 EFYFSYGRCTGFTVRIHHNRRSRINNQVIGQDFVCSKEGYRAKKYVHrKDRILPPPPITREGCGAMIRLALK-GGKWVVTKFVKDHT 161 6*****************************************998882233334899***************.************** PP FAR1 87 Hela 90 H+l+ SapurV1A.0834s0150.1.p 162 HKLM 165 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-20 | 76 | 165 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDKQSVHGFD SNESDLDLQG EAYECGRIED ELQNNLDFCV DEDNKTSVHS IERAVNAEGL 60 EPCVGMEFNS RDEAREFYFS YGRCTGFTVR IHHNRRSRIN NQVIGQDFVC SKEGYRAKKY 120 VHRKDRILPP PPITREGCGA MIRLALKGGK WVVTKFVKDH THKLMSPSKV PWRGSGKQLI 180 SEDEKDKRIR ELSLELYNER QKCKRRCAVY EEQLNMILQD LEKHTEHVSK KVDDVVKSIR 240 EIEEEHPDDS NSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0834s0150.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012931.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_011012932.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_011026428.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_011026429.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | B9HH49 | 1e-178 | B9HH49_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01940.1 | 1e-179 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-33 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0834s0150.1.p |