PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0821s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 381aa    MW: 42568.2 Da    PI: 7.9256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0821s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12192239355
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             + h ++Er+RR+++ + f  L  ++P +     kK++Ka++Le A++Y+k+Lq
  SapurV1A.0821s0050.1.p 192 QDHIMAERKRREKLSQQFIALSAIVPGL-----KKMDKASVLEDAMKYMKQLQ 239
                             5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-12190243No hitNo description
Gene3DG3DSA:4.10.280.104.2E-16193250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10193239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-17194256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDIAAWKWLS EMGMDDYRFI HQCHINSLAE FTTQNVANTL PGENLQRSFS SESFSSKPSL  60
MMARNTTITG TSNGSSSETS QASIETPGKQ QKTNSWNSNI ATLHQSPKPP SPISESFSFN  120
TPAPPPTTSS QQFHRNLDRM IKPNDEAASP INMHIQTSIS KAACERSESY APEAKQGIKR  180
NYAMTRTALR VQDHIMAERK RREKLSQQFI ALSAIVPGLK KMDKASVLED AMKYMKQLQE  240
QLKELQDQTR TRTMESVVLL KKSKLSIDGE CSSSDENFDD RSSSLLPEIE ARTTDKDVLI  300
RIHCRNQQGV GMKILSEIEN LHLSVLNSSV LVFGNSTLDI TVIAQMDDEF SLTMKDVVKN  360
LRSACLKLYQ ARALKPEDSP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202ERKRRE
2198203RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0821s0050.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310318.30.0transcription factor bHLH18
RefseqXP_024461083.10.0transcription factor bHLH18
RefseqXP_024461084.10.0transcription factor bHLH18
RefseqXP_024461085.10.0transcription factor bHLH18
SwissprotQ9T0722e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A3N7GPD80.0A0A3N7GPD8_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-48bHLH family protein