PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0808s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 264aa    MW: 29019.9 Da    PI: 9.0445
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0808s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.65.7e-221662349
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            i n+sn  vtfskRr g++KKA+ELS+LC+aev +i+fs+  k++ +
  SapurV1A.0808s0160.1.p 16 IPNDSNLMVTFSKRRSGLFKKASELSTLCGAEVTLIVFSPGKKVFSF 62
                            88**************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.137666IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-29665IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-27791IPR002100Transcription factor, MADS-box
CDDcd002654.75E-34779No hitNo description
PRINTSPR004043.3E-18828IPR002100Transcription factor, MADS-box
PfamPF003194.9E-241562IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVRSSRGRQK LEMVKIPNDS NLMVTFSKRR SGLFKKASEL STLCGAEVTL IVFSPGKKVF  60
SFGHPSVDKV VEQYLSGSAP PRPSGAYQLV EAHRNARICD LSMNLTQLQE ELEMEKKRGE  120
ELDNLRKASQ SQYWWDRPIQ ELNLAQLEQF KAALLDLKQN LFRQAQQVLL QNSAPQPFFS  180
PNPGTAGILP FDNRNTGFNS NMAVAPFSSN TTMAPFNTNM TGAPFDANMA GAPFDANMAG  240
APFDANMAGA PYAYTLGYGN GFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-17792186Myocyte-specific enhancer factor 2A
3kov_B5e-17792186Myocyte-specific enhancer factor 2A
3kov_I5e-17792186Myocyte-specific enhancer factor 2A
3kov_J5e-17792186Myocyte-specific enhancer factor 2A
3p57_A5e-17792186Myocyte-specific enhancer factor 2A
3p57_B5e-17792186Myocyte-specific enhancer factor 2A
3p57_C5e-17792186Myocyte-specific enhancer factor 2A
3p57_D5e-17792186Myocyte-specific enhancer factor 2A
3p57_I5e-17792186Myocyte-specific enhancer factor 2A
3p57_J5e-17792186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0808s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014568.11e-134PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-56AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2K1ZSV21e-132A0A2K1ZSV2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03430.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-52AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]