PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0789s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YB
Protein Properties Length: 196aa    MW: 21488.3 Da    PI: 4.5263
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0789s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB75.67.6e-2450132385
                   NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                             ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se++d c re+++ti+++ +l al  lGf +y+e + +
  SapurV1A.0789s0090.1.p  50 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCSREDKRTIAPEHVLKALQVLGFGEYIEDVYT 132
                             6899**************************************************************************98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.8E-3847179IPR009072Histone-fold
SuperFamilySSF471131.88E-3351180IPR009072Histone-fold
PfamPF008085.8E-2153118IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MPPLLLLNTH STNTAIARTC EYGSESVDSV SPIGLRDLKM EPMDIVGKSK EDASLPKATM  60
TKIIKEMLPP DVRVARDAQD LLIECCVEFI NLVSSESNDV CSREDKRTIA PEHVLKALQV  120
LGFGEYIEDV YTAYEQHKLE TMHDSLKGAK WSNGAAMTEE EAAAAQQRMF DEARARMNGG  180
ASAPKQPETD QSLES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B1e-305117412133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0789s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021674993.11e-102protein Dr1 homolog isoform X1
RefseqXP_021674994.11e-102protein Dr1 homolog isoform X1
SwissprotP495921e-93NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A061FYD72e-99A0A061FYD7_THECC; Nuclear factor Y, subunit B13 isoform 2
STRINGcassava4.1_018195m1e-100(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.28e-89nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]