PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0761s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 453aa    MW: 51052.7 Da    PI: 7.5152
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0761s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.66e-134486144
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                            rg WT+eEd ll + v+++ g++Wk+Ia++++ gRt  qc  rw
  SapurV1A.0761s0070.1.p 44 RGGWTEEEDCLLEESVRKFNGRHWKKIAECLP-GRTVSQCFCRW 86
                            789*****************************.*******8888 PP
2Myb_DNA-binding53.84.4e-1796142148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g WT+eEd+ + ++v ++G + W+ Ia+ ++ gR +kqc++rw+++l
  SapurV1A.0761s0070.1.p  96 KGTWTKEEDDCIMELVGKHGCRKWSVIAKSLP-GRVGKQCRERWFNHL 142
                             799*****************************.*************97 PP
3Myb_DNA-binding48.81.6e-15148191146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             r +WT+eE+  l  +++ +G++ W++Iar ++ gR+++ +k++w+ 
  SapurV1A.0761s0070.1.p 148 RAPWTEEEEMTLTYYHEIYGNK-WAKIARFLP-GRSDNAIKNFWNC 191
                             569*******************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.443990IPR017930Myb domain
SuperFamilySSF466894.45E-144196IPR009057Homeodomain-like
SMARTSM007171.3E-124392IPR001005SANT/Myb domain
PfamPF002499.2E-114486IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-1946102IPR009057Homeodomain-like
CDDcd001672.96E-114790No hitNo description
PROSITE profilePS5129426.81191146IPR017930Myb domain
SuperFamilySSF466891.5E-3094189IPR009057Homeodomain-like
SMARTSM007173.4E-1395144IPR001005SANT/Myb domain
PfamPF002491.2E-1696142IPR001005SANT/Myb domain
CDDcd001673.22E-1298142No hitNo description
Gene3DG3DSA:1.10.10.602.2E-26103148IPR009057Homeodomain-like
SMARTSM007171.4E-16147195IPR001005SANT/Myb domain
PROSITE profilePS5129417.268147197IPR017930Myb domain
PfamPF002493.5E-13148190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-22149197IPR009057Homeodomain-like
CDDcd001676.21E-12150193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MGFETEEELI NVGSENEVID ASPCSVYFGA SPRWTTGPTR SSRRGGWTEE EDCLLEESVR  60
KFNGRHWKKI AECLPGRTVS QCFCRWDRVL NPAIFKGTWT KEEDDCIMEL VGKHGCRKWS  120
VIAKSLPGRV GKQCRERWFN HLDPTINRAP WTEEEEMTLT YYHEIYGNKW AKIARFLPGR  180
SDNAIKNFWN CVLKKNLDSN SLHGWTMDLF TVSSLNSYNC DTELNCLKLK ERQSVEKAAF  240
VNENIELRCS AETSASRSGK AKGTGKKNEV HKLHIQAEET SQNCLHRESQ QQSTLVSNLD  300
ADEVPSMDAC AMHPISPICC STPTKYTRSI SVNNTSPESL LRNSARTFKN TPSIIRKRAL  360
RGAAIAKTSD VTCTPSLKFS CANDCQIVDS TNSPVEKQGF LPSFEPETSL VIKSLKRHLD  420
YAFDMEKEAD PGKCGKSVPL SEPLHLNFLE SW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-52441979159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-52441979159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0761s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304479.30.0transcription factor MYB3R-3
TrEMBLA0A3N7G6W90.0A0A3N7G6W9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.13e-69myb domain protein 3r-3