PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0694s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 452aa    MW: 49287 Da    PI: 6.6864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0694s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.5e-063423801154
                             HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  SapurV1A.0694s0030.1.p 342 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 380
                             5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.963331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0027337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11341397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-7341384No hitNo description
Gene3DG3DSA:4.10.280.101.0E-9345389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MADEYTSTNW WASSSSSRNR FDSTGSSSTA SGLTNLGSFT WPTEMVDVKG RSSMETVSVS  60
DSSAVFHDSQ KLQQGHDSSA DLHMMGLGLP SQAIDWNQAL LRGDKSESSF RSMLQDNLSS  120
STNYQQETGI GSSQAQWRSE RVFAGVSAGD SSMNEFKQMN RGFSSEQPQF SPHGSSSDST  180
VTGQGLQSSF PMDSSGIYGS PSTMLQGLLG SDSQAQQSSF ENRSMSYSYG ANYGVSSNDQ  240
LLPWSKTPQF LRNSPPKQPP HNQLHLSNNA PFWNASSGAM SDVRPSFFPS MQPQFTTSNF  300
DEKPKNISEV RDSNTSVKKS GGETAAKRPR NETPSPSPAF KVRKEKMGDR ITALQQLVSP  360
FGKTDTASVL SEAIEYIKFL HEQVTVMSAP YMKNGAPIHH QQSSDKSKDS EGQKQDLRSR  420
GLCLVPVSST FPVTHETTVD FWTPTFGGTF R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0694s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030917.10.0PREDICTED: transcription factor bHLH123
SwissprotQ8GXT32e-93BH123_ARATH; Transcription factor bHLH123
TrEMBLB9I0570.0B9I057_POPTR; Uncharacterized protein
STRINGPOPTR_0011s13320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.15e-95bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]