PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0639s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 485aa    MW: 55476.6 Da    PI: 6.8249
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0639s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix772.9e-24107207186
                trihelix   1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 
                             +Wt+++v++Li a+ +++++++++               +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +
  SapurV1A.0639s0010.1.p 107 KWTDHMVRLLIMAVFYIGDEIGSEGsdpigkkkpgglaqQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtA 193
                             7****************9999975335566667777777**********************************************55 PP

                trihelix  73 sessstcpyfdqle 86 
                             ++++++  ++d ++
  SapurV1A.0639s0010.1.p 194 CRVVENQNLLDTMD 207
                             9*****99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-21105230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEHNGLGGGI FPGIGSGMLG LELPLHPPEN SQNPNHLHHP QVVAYSHHES DNRQHSQQSV  60
KHAYPYASSS KPKLLLSPLS DEDEPSFTGD DSTTDGKRKM SPWQRMKWTD HMVRLLIMAV  120
FYIGDEIGSE GSDPIGKKKP GGLAQQKKGK WKSVSRAMME KGFYVSPQQC EDKFNDLNKR  180
YKRVNDILGK GTACRVVENQ NLLDTMDLSP KTKEELRKLL NSKHLFFREM CVYHNSCGHA  240
PSWVAFGNNH SPEMATGPSH AQHLQAAQQQ HQRCSHSTEN TQAVTNSRTE TEGSKMAKRA  300
RNEEDAVEDD DYESNDDEDH YEDDEDEAIK GDSRHQNGHG QGDEEDHHDE KSSRKRPRKD  360
VFSTTSLMQQ LNGEIMNVLQ DGAKSSWEKN HWMRLRLMQL EEQQVSYQCQ AFELEKQRLK  420
WVKFSSKKER EMERVKLENE RSRLENERMV LIVRKKELGL LDTQHQQQQQ LPSNKRNDTS  480
SIAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426435KKEREMERVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0639s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442996.10.0uncharacterized protein LOC18106263 isoform X1
TrEMBLA0A2K1XDC90.0A0A2K1XDC9_POPTR; Uncharacterized protein
STRINGXP_002528638.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-74sequence-specific DNA binding transcription factors