PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0614s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 379aa MW: 40961.8 Da PI: 4.7749 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 6.7e-10 | 108 | 147 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +WT+eE + l++ v ++G + W+++a+ + ++t +c+s++ SapurV1A.0614s0070.1.p 108 AWTEEETLHLLESVLRHGDD-WDLVAQNVK-TKTKLDCISKL 147 6*****************88.********9.*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 14.968 | 104 | 155 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-6 | 105 | 153 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.42E-8 | 106 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-6 | 107 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.57E-6 | 108 | 146 | No hit | No description |
Pfam | PF00249 | 7.3E-10 | 108 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF16495 | 5.1E-20 | 282 | 356 | IPR032451 | SMARCC, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MPDKLKPISV GSVQSSAGGS GGGGGSGLKL PPLASYSDVF GELAGKKKGV ICGNCGGSCD 60 SGQYDYSKQG DYVICQKCFN DGTYGENKSK DDFKLNDSAE NNVSNAAAWT EEETLHLLES 120 VLRHGDDWDL VAQNVKTKTK LDCISKLIEL PFGDLILSSA YGKANSSGQS GSTNNSKPVP 180 AAPSEHQDDT KYEDQLLEQM NANEENGDIM DDGPLLKRRH ITSISDAGGS LMKQLSPSVY 240 IGNIYYQSLG LFTCLSLTGT EEAPAWQNDI PLSLRLRAAV STSLGAAAAH AKLLADQEDR 300 EVENLMATIV ETQMKKLHHK IKHFDDLELI MEKEYAELDE LTESLTEERI DVLQRAIRAG 360 ISKSRDHASI KFHLSNVV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0614s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004532 | 3e-31 | AP004532.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT09L22, TM0063, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021690143.1 | 1e-137 | SWI/SNF complex subunit SWI3A isoform X3 | ||||
TrEMBL | A0A067JIC8 | 1e-135 | A0A067JIC8_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0015s11250.1 | 1e-138 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9816 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0614s0070.1.p |