PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0603s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 280aa    MW: 31154 Da    PI: 7.4347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0603s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.6e-16165211455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A++Y+k+Lq
  SapurV1A.0603s0060.1.p 165 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIDYLKQLQ 211
                             6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.82E-17155215No hitNo description
Gene3DG3DSA:4.10.280.102.4E-20158221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-20158221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.962161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-13165211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-18167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVVEKRRHQH YHPFQQQIAN QRVMGGIYNN ETNNINNTCS ASSSSRHHHR SSDDISLFLH  60
QILLRSPSST SSSSFIGPQT PQPFSVPAPS DHPLRAGVML GMDSSDGGGS GLWPGNVTTR  120
LIMSENETDL EGEWESEEVL KALIDEMSAK PAPPRSSKRT RAAEVHNLSE KRRRSRINEK  180
MKALQNLIPN SNKTDKASML DEAIDYLKQL QLQVQMLSMR NGTSLHPMVL PGLLQPLQLS  240
QVRTGFDEET GYKHLNLTTS VPLDGEAWLQ TMFTSSNQV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0603s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457160.11e-116transcription factor SPATULA isoform X2
TrEMBLA0A3N7EYB31e-114A0A3N7EYB3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18280.12e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-39bHLH family protein