PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0575s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 362aa    MW: 39868.3 Da    PI: 7.989
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0575s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.92.2e-15259284126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +ktelC+ +++tGtC+yG+ C+FaHg
  SapurV1A.0575s0100.1.p 259 WKTELCNKWQETGTCPYGNHCQFAHG 284
                             8************************8 PP
2zf-CCCH231.4e-07297322126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             ykt  Cr  +++G C+yG rC+F H+
  SapurV1A.0575s0100.1.p 297 YKTQACRMVLAGGACPYGHRCHFRHS 322
                             9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-18255291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-11255290IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-9258285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234258286IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-12259284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-12292325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-9292327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479296324IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5296323IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-5297322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEKTESPLSD SKTAAHSAPF DYHQTHDQDQ FASNFTSLYH SVFPPKPSQL PNSLSFTPST  60
TASPSSSTAA DEISTESRLR QARLILEYQD LCDHYNLSLA RLQTLTNELE LIRRENADLK  120
VANSELVKLI SLSSQASVMQ HQNRTLGNNR DVAFERRNNA NNVGTERVTL PKSISVRSTG  180
FVKVNQADSG NVSNNGGGRG SASSNSTRSR VASQLDQLVS GSMQQRVYVP GGGGGGGGKR  240
SEEEIASGME LEVFNQGMWK TELCNKWQET GTCPYGNHCQ FAHGIGELRP VIRHPRYKTQ  300
ACRMVLAGGA CPYGHRCHFR HSLTDQDRWT DAAVYESGPS EGWCLNPMRY RQHQLPLSVM  360
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22259322467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0575s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090410.0AC209041.1 Populus trichocarpa clone POP051-F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454735.10.0zinc finger CCCH domain-containing protein 14 isoform X4
TrEMBLA0A2I4KKY90.0A0A2I4KKY9_POPTR; C3H family protein
STRINGPOPTR_0005s15100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-70C3H family protein