PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0550s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28836.6 Da PI: 7.6661 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.3 | 3.2e-09 | 123 | 163 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a+iL +A++Y+k L SapurV1A.0550s0030.1.p 123 ARLRRERISEKIRILQRLVPGG-----RKMDTASILDEAIRYVKFL 163 699*****************96.....7****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.142 | 114 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-13 | 119 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-14 | 119 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-12 | 120 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.34E-10 | 120 | 168 | No hit | No description |
Pfam | PF00010 | 1.9E-6 | 124 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MNINQTESTN HISNLRMSME DQVLHHGRLP FDSICPSYPL QLQQAPVPAS NQITPPTFHS 60 HNQIGNNTDE ADQDEPEEEL GAMKEMMYRI AAMQPVDIDL ATIDHKPRRK NVRISDDPQS 120 VAARLRRERI SEKIRILQRL VPGGRKMDTA SILDEAIRYV KFLKRQIRLL QPNHQHQHQP 180 CNTNEDRQIP CNNKPLNSTT TTTATSSSLE PRAALVGYLL GGHGDNPLCF NHEVARILLT 240 KGGYIYGLWN NHNC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 110 | KPRRKN |
2 | 123 | 128 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0550s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022970.1 | 1e-132 | PREDICTED: transcription factor HEC3-like | ||||
TrEMBL | A0A3N7FH51 | 1e-131 | A0A3N7FH51_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s06220.1 | 1e-103 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF651 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 9e-44 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0550s0030.1.p |