PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0542s0170.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 1195aa    MW: 128593 Da    PI: 4.4126
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0542s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000172244123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C++Cg +F++++   rH r H
  SapurV1A.0542s0170.1.p 22 YVCNKCGWPFPNPHPSARHRRAH 44
                            9*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.0372244IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1195 aa     Download sequence    Send to blast
MDSQDPRKNP SHTPGHESHG VYVCNKCGWP FPNPHPSARH RRAHRKICGT LKGYKFVDSE  60
ETPLSALSDD DRGSDEDPKT PSPKGLGRGI NEKGSGGVGN RSNRSEDDVF TDAIAEFPES  120
GSSSVTGEHT KDVKEPEINL EVNKATDQSS KDGSITVISP PPSNSADHIQ MQSTEVPVIN  180
LSESPQESLD HDLNATIASM SRTLTDCRGE QSGFEHSHDN RSSARDPIPI KLETQTDASQ  240
EKKSVSVEDL PKTDAKGNEE TKSEGQLLDV VDSTNDNAKD VSEVASKSQK MEDVTSQPVP  300
AAEVPQLKEG GYTDDLASGM SFNDHSPEVK SVEPAHSSIS TAQIKGGAPQ EIDSAVYANS  360
TVTCDNKGEG NENVHVLVVP NDITVVSDAE NMVKGFKDLE GGKLPKLMNV DSFDVFNNVK  420
DSDLKNNPQV LNSRSLTEDT EASASDMHVL IDNLEPKDGT SQHIVEELLD EAEADVPQIS  480
EVSVTDVVTG DLEKSISVHS PEENVPRDHC DTSSLTSSIE HATKVVPHTN TVVVPSDAEV  540
RQTKLVGMDG TGNDEKDKIE SSEIGVKDNF AENTIPSFKH VSIPSEQADQ RNSLIGDVKA  600
TGLEEGKIER CNVSEIVTEG DSVSGLGEEN LLREPNSTLE SAVNVESRFT SENEINVCEA  660
NLPQHASIPS EQADQRNRLH GDVKAAGLEE GKIERRNVSE IVTEGDSLSG LGEENLLRKT  720
KTIPESAVNV ESRFTSENEI NVCEATLPQH ASIPSDQADQ RNRLHGDVIA AGLEEGKIER  780
CNVSEIVTEG DSVSGLGEEN LLRKPKTTPE SAVNVESRFT SENEINVCEV KLPHHEHTDI  840
GRVLDPQESR KETESNGMAN QEAEHAGEDS TAAESDSGGG DVEVLRKSSE EKMVREPLVS  900
PSEPSSTLQN SSPVAHNQAR DFPGVASGNT PESLPDEGVN YFATQQVVAS ATDFSADSIS  960
QTDSLEGHWG SVSVLSTQSD IPAILDAEPL PSNGSRASEA EATLKKPIAA SETEHADKSD  1020
IFDPPSVTAL IEPRDVVNQK AAASEIQTTW NPQQPRAASV QAGLSPSITD VSNELQGRKK  1080
QEEIMAKVTD WSTGKQHTPL KNLLGEASME TRSKSLNAKE IPVEKDGPAA KDNGSLPKTV  1140
SSILAPQAPE GEPAKLEEKA WSSPARYPAD IKREKRRVRG RPYWAQFVCC SSVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0542s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2140971e-36AC214097.1 Populus trichocarpa clone POP027-H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006103.10.0PREDICTED: uncharacterized protein LOC105112197 isoform X1
TrEMBLA0A2I4KKX10.0A0A2I4KKX1_POPTR; C2H2 family protein
STRINGPOPTR_0014s14320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50511719