PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0542s0170.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 1195aa MW: 128593 Da PI: 4.4126 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 22 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg +F++++ rH r H SapurV1A.0542s0170.1.p 22 YVCNKCGWPFPNPHPSARHRRAH 44 9*******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.037 | 22 | 44 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 24 | 44 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1195 aa Download sequence Send to blast |
MDSQDPRKNP SHTPGHESHG VYVCNKCGWP FPNPHPSARH RRAHRKICGT LKGYKFVDSE 60 ETPLSALSDD DRGSDEDPKT PSPKGLGRGI NEKGSGGVGN RSNRSEDDVF TDAIAEFPES 120 GSSSVTGEHT KDVKEPEINL EVNKATDQSS KDGSITVISP PPSNSADHIQ MQSTEVPVIN 180 LSESPQESLD HDLNATIASM SRTLTDCRGE QSGFEHSHDN RSSARDPIPI KLETQTDASQ 240 EKKSVSVEDL PKTDAKGNEE TKSEGQLLDV VDSTNDNAKD VSEVASKSQK MEDVTSQPVP 300 AAEVPQLKEG GYTDDLASGM SFNDHSPEVK SVEPAHSSIS TAQIKGGAPQ EIDSAVYANS 360 TVTCDNKGEG NENVHVLVVP NDITVVSDAE NMVKGFKDLE GGKLPKLMNV DSFDVFNNVK 420 DSDLKNNPQV LNSRSLTEDT EASASDMHVL IDNLEPKDGT SQHIVEELLD EAEADVPQIS 480 EVSVTDVVTG DLEKSISVHS PEENVPRDHC DTSSLTSSIE HATKVVPHTN TVVVPSDAEV 540 RQTKLVGMDG TGNDEKDKIE SSEIGVKDNF AENTIPSFKH VSIPSEQADQ RNSLIGDVKA 600 TGLEEGKIER CNVSEIVTEG DSVSGLGEEN LLREPNSTLE SAVNVESRFT SENEINVCEA 660 NLPQHASIPS EQADQRNRLH GDVKAAGLEE GKIERRNVSE IVTEGDSLSG LGEENLLRKT 720 KTIPESAVNV ESRFTSENEI NVCEATLPQH ASIPSDQADQ RNRLHGDVIA AGLEEGKIER 780 CNVSEIVTEG DSVSGLGEEN LLRKPKTTPE SAVNVESRFT SENEINVCEV KLPHHEHTDI 840 GRVLDPQESR KETESNGMAN QEAEHAGEDS TAAESDSGGG DVEVLRKSSE EKMVREPLVS 900 PSEPSSTLQN SSPVAHNQAR DFPGVASGNT PESLPDEGVN YFATQQVVAS ATDFSADSIS 960 QTDSLEGHWG SVSVLSTQSD IPAILDAEPL PSNGSRASEA EATLKKPIAA SETEHADKSD 1020 IFDPPSVTAL IEPRDVVNQK AAASEIQTTW NPQQPRAASV QAGLSPSITD VSNELQGRKK 1080 QEEIMAKVTD WSTGKQHTPL KNLLGEASME TRSKSLNAKE IPVEKDGPAA KDNGSLPKTV 1140 SSILAPQAPE GEPAKLEEKA WSSPARYPAD IKREKRRVRG RPYWAQFVCC SSVN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0542s0170.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214097 | 1e-36 | AC214097.1 Populus trichocarpa clone POP027-H14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006103.1 | 0.0 | PREDICTED: uncharacterized protein LOC105112197 isoform X1 | ||||
TrEMBL | A0A2I4KKX1 | 0.0 | A0A2I4KKX1_POPTR; C2H2 family protein | ||||
STRING | POPTR_0014s14320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5051 | 17 | 19 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0542s0170.1.p |