PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0532s0190.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 25224.8 Da PI: 8.0702 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.1 | 4.8e-41 | 35 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq SapurV1A.0532s0190.1.p 35 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFSLQQQ 121 7***********************9989*********************************************************** PP DUF260 87 leqlkaelallkee 100 + +l+ael++l+++ SapurV1A.0532s0190.1.p 122 VVNLQAELSYLQAH 135 *********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.093 | 34 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.0E-40 | 35 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSATKTSPIN SGVGGGSSGG GGGGGGGGGG GGGGPCGACK FLRRKCVPGC IFAPYFDSEQ 60 GAAHFAAVHK VFGASNVSKL LLHIPVHKRL DAVVTICYEA QARLRDPVYG CVAHIFSLQQ 120 QVVNLQAELS YLQAHLAALE VPSPPPPPPP TLVTPPPLSI ADLPSASAIP AAYDLSSLFD 180 PMMQPTWSMQ QQQRQMDIRQ FGGSGGSSGT SGGELQALAR ELLHGRGSPP PGFVPCTDAL 240 ASPSISK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-38 | 31 | 136 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-38 | 31 | 136 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0532s0190.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301295.2 | 1e-122 | LOB domain-containing protein 30 | ||||
Swissprot | O81323 | 3e-82 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | B9GPH4 | 1e-121 | B9GPH4_POPTR; LBD family protein | ||||
STRING | XP_006491458.1 | 1e-110 | (Citrus sinensis) | ||||
STRING | XP_006445237.1 | 1e-110 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 7e-76 | LOB domain-containing protein 18 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0532s0190.1.p |
Publications ? help Back to Top | |||
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