PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0524s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 192aa MW: 21568.3 Da PI: 11.0543 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.8 | 3e-11 | 15 | 82 | 14 | 78 |
T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT- CS B3 14 grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegD 78 +r ++p f+++ g ++ + d sgr+W +++++rkk+++ v+++GW+ Fv+++gLk+ D SapurV1A.0524s0010.1.p 15 KRYSVPTGFLSSLpsfnG---GHAVDFQAVDGSGRVWPFRCSVRKKGRHpkPVISRGWRAFVDSKGLKTDD 82 467999999988886643...346789999************999999999*****************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-11 | 6 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-9 | 6 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.09E-14 | 6 | 82 | No hit | No description |
Pfam | PF02362 | 1.1E-8 | 15 | 82 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MARSSKVLRE TDIKKRYSVP TGFLSSLPSF NGGHAVDFQA VDGSGRVWPF RCSVRKKGRH 60 PKPVISRGWR AFVDSKGLKT DDRGEDAPSR QKKNERRTPR RRKTTMEATL SLPTSEFLTV 120 SLEGQDTLNQ HHHQQNQKCN RFPRPFIHRE LPAPPPHVSM SGGGGAKRGF VGNDSSSFSW 180 RRVDIEIDDC D* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 102 | PRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0524s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213428 | 5e-62 | AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | POPTR_0015s01780.1 | 4e-78 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0524s0010.1.p |