PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0523s0110.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 14188.3 Da PI: 10.1814 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.6 | 8.5e-17 | 6 | 101 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---...--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkke.esktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 f+k+l++ dv + + +p + ++++++++e sk++ + d + r+W ++++ rk++ + vl++GW +Fvk++ Lk+gD v+F++ SapurV1A.0523s0110.1.p 6 FEKTLSKTDVEYR--MAIPMDSLSAFEIPEEeYSKKVDVFDNNRRRWIFRCSKRKHDTHpkPVLSSGWIKFVKEKSLKVGDQVIFSV 90 8999977777765..8*******999554442789****************9988888899*************************8 PP -SS.SEE..EE CS B3 85 dgr.sefelvv 94 +++ + l + SapurV1A.0523s0110.1.p 91 SDKdGAEGLQF 101 76535554555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-18 | 3 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.49E-17 | 4 | 88 | No hit | No description |
PROSITE profile | PS50863 | 10.475 | 4 | 107 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-16 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.1E-5 | 6 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-14 | 6 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MSKRLFEKTL SKTDVEYRMA IPMDSLSAFE IPEEEYSKKV DVFDNNRRRW IFRCSKRKHD 60 THPKPVLSSG WIKFVKEKSL KVGDQVIFSV SDKDGAEGLQ FGIQARKRAK LFGQEFWTDP 120 L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0523s0110.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455035.1 | 4e-62 | putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | B9GZ48 | 2e-51 | B9GZ48_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s00450.1 | 3e-52 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 5e-08 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0523s0110.1.p |