PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0523s0040.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 119aa MW: 13458.5 Da PI: 6.25

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0523s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.1	1.8e-14	5	86	2	83
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83 f++l+++d ++g l++p + + ++ ++ +++ d++g++W++ ++++++++ ++l+ GW++Fv++ +L++ D v+++ SapurV1A.0523s0040.1.p 5 FSKLLTADDIENG-LSIPGCSLGQLPDQEGLTMSMQVHDRNGQVWTFSCTIKRYDSVgHFLSVGWNKFVRERDLRVDDKVTIH 86 4677899999998.******99999999***************986666556*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.33E-11	4	86	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.6E-13	4	88	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.96E-10	5	86	No hit	No description
Pfam	PF02362	3.5E-12	5	86	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MAMVFSKLLT ADDIENGLSI PGCSLGQLPD QEGLTMSMQV HDRNGQVWTF SCTIKRYDSV 60 GHFLSVGWNK FVRERDLRVD DKVTIHEEAM KKQGSGTWIK VEVKRIIRLF GEDIWADV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0523s0040.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002451.1	4e-54	PREDICTED: uncharacterized protein LOC105109425
TrEMBL	B9N8A7	3e-66	B9N8A7_POPTR; Uncharacterized protein
TrEMBL	U7DUM1	3e-66	U7DUM1_POPTR; Uncharacterized protein
STRING	POPTR_0004s22990.1	5e-67	(Populus trichocarpa)
STRING	POPTR_0601s00200.1	4e-67	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13182	5	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	4e-07	related to ABI3/VP1 2

Link Out ? help Back to Top
Phytozome	SapurV1A.0523s0040.1.p