PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0521s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 26084.8 Da PI: 4.6341 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.5e-18 | 16 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGVr +k +grWv+eIr p++ r r++lg++++ae+Aa+a + a +l+g SapurV1A.0521s0050.1.p 16 SKFKGVRKRK-WGRWVSEIRLPNS---RERIWLGSYDSAEKAARAFDVALFCLRG 66 79*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.27E-28 | 16 | 76 | No hit | No description |
SuperFamily | SSF54171 | 3.01E-20 | 16 | 75 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.8E-11 | 16 | 66 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-28 | 17 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.931 | 17 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-32 | 17 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVKYSAGKPI AERRDSKFKG VRKRKWGRWV SEIRLPNSRE RIWLGSYDSA EKAARAFDVA 60 LFCLRGRVAK FNFPDNPPNI AGARSLSPAE IQEVAAKFAN SEPQRSQSDQ FETNQSVSES 120 RAESPCTSVV SESRAESPCT SAVSESRAES PCTSVVSDET VKLESSELRW DGPFLDMLMN 180 TNSSNYSAEY GIFPGFDDLH NDFFPSSLAP NLDYGEETNY DGVLEQDSFL WNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 16 | 74 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 24 | KGVRKRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0521s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155952 | 1e-105 | EF155952.1 Populus trichocarpa RAP2-like protein (RAP2L11) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458985.1 | 1e-122 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A9PLA1 | 1e-122 | A9PLA1_POPTR; RAP2-like protein | ||||
STRING | POPTR_0006s14100.1 | 1e-122 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 3e-60 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0521s0050.1.p |