PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0458s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 447aa    MW: 49004.2 Da    PI: 7.2578
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0458s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-15139184147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c+ rw++ 
  SapurV1A.0458s0070.1.p 139 RGHWRPAEDNRLRELVALYGPQNWNLIAEKLE-GRSGKSCRIRWFNQ 184
                             899*****************************.***********996 PP
2Myb_DNA-binding56.28.1e-18191234146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             r+++T++E+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
  SapurV1A.0458s0070.1.p 191 RKAFTEDEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 234
                             789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.029134185IPR017930Myb domain
SMARTSM007173.7E-13138187IPR001005SANT/Myb domain
SuperFamilySSF466892.58E-27139232IPR009057Homeodomain-like
PfamPF002494.2E-15139184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-25140192IPR009057Homeodomain-like
CDDcd001673.38E-12142183No hitNo description
PROSITE profilePS5129426.328186240IPR017930Myb domain
SMARTSM007171.9E-14190238IPR001005SANT/Myb domain
PfamPF002491.1E-14191233IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-20193239IPR009057Homeodomain-like
CDDcd001671.84E-11193233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAKKSVICAA PYNNSTNDLV CHSSTAPSSS SPCSSMGVVY TDIGSLSLSP SFGMTPPGSS  60
SSHEMENRRL TWGFPFMGNY RANSAAAAAE VKVSDCSDGS GENDEAINHN ANSSHDENPN  120
ENMTSGRETD SGQSKLCARG HWRPAEDNRL RELVALYGPQ NWNLIAEKLE GRSGKSCRIR  180
WFNQLDPRIN RKAFTEDEEE RLMQAHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARKY  240
REQSSAYRRR RLSQSVSRRV EEIPSYVGRD AGMKAEPPPC CPSIPGAGRL NNLSSYQIGN  300
FNGAGCGGVD NGINGPPHMT SGGEAVSSIN VPRSGFCSQQ TPLDFFFDPK SNDTTGMFSQ  360
ARSWDRPNEE PRISGFYSHQ YIMAMQQSNY PNPYCFSDFT APTLPQAVSV SQPSPSSPSI  420
ADQSRVNGHF ETDPPPFIDF LGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-341392394104C-Myb DNA-Binding Domain
1msf_C6e-341392394104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251YRRRRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0458s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466059.10.0uncharacterized protein LOC7492931
SwissprotQ9SEZ46e-73MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2K1YVD30.0A0A2K1YVD3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s17470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.17e-72myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]