PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0458s0040.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

M-type_MADS

Protein Properties

Length: 346aa MW: 38272.3 Da PI: 7.9922

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0458s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.9	4.1e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+++++++fs+tgk SapurV1A.0458s0040.1.p 10 KLENTNGRQATYAKRKHGIMKKANELSILCDIDILLLMFSPTGK 53 6799**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-27	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.591	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.16E-25	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.52E-26	2	82	No hit	No description
PRINTS	PR00404	2.7E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDILLLMFSP TGKPSLCKGA 60 SSSIEEVITK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIPEFLGSS SQSIEDLTSQ 120 SRLLQNQLSD VHKRLSYWTN PDKINSIENL GQLENSLRES LNQIRSHKFQ NGMHVPFRMG 180 AEQQLPPLLW IPNNDSQHIM LPEDQSLLPH RDAECTASSS FGSYSGYFGA GKNSELSSSG 240 QESGMNGILD ELNGTASLRL QLAGQYPYLP GPYNLNLLND TKFQPAAELN VQKGPGDFNV 300 GGSFEAPKPE YDSGPRGWAS TPGSCAVTMF DDHLYTQVRF PSVLV*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDILLLMFSP TGKPSLCKGA  60
SSSIEEVITK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIPEFLGSS SQSIEDLTSQ  120
SRLLQNQLSD VHKRLSYWTN PDKINSIENL GQLENSLRES LNQIRSHKFQ NGMHVPFRMG  180
AEQQLPPLLW IPNNDSQHIM LPEDQSLLPH RDAECTASSS FGSYSGYFGA GKNSELSSSG  240
QESGMNGILD ELNGTASLRL QLAGQYPYLP GPYNLNLLND TKFQPAAELN VQKGPGDFNV  300
GGSFEAPKPE YDSGPRGWAS TPGSCAVTMF DDHLYTQVRF PSVLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	5e-15	1	92	1	90	MEF2 CHIMERA
6byy_B	5e-15	1	92	1	90	MEF2 CHIMERA
6byy_C	5e-15	1	92	1	90	MEF2 CHIMERA
6byy_D	5e-15	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0458s0040.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013174.1	0.0	PREDICTED: MADS-box protein SVP isoform X3
Refseq	XP_011013183.1	0.0	PREDICTED: MADS-box protein SVP isoform X3
Refseq	XP_011013188.1	0.0	PREDICTED: MADS-box protein SVP isoform X3
Refseq	XP_011013196.1	0.0	PREDICTED: MADS-box protein SVP isoform X3
Swissprot	Q1PFA4	1e-114	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A3N7FMP7	0.0	A0A3N7FMP7_POPTR; Uncharacterized protein
STRING	POPTR_0010s17450.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-87	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	SapurV1A.0458s0040.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]