PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0450s0110.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 223aa MW: 25785.6 Da PI: 6.5226 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 6.7e-09 | 7 | 52 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +W+ +Ed+++ +a +++ + +W++I+++++ g++ +++ ++ + SapurV1A.0450s0110.1.p 7 SWSRQEDKQFEQALVLFPEEtpnRWEKISSYVP-GKSWREVRKHYED 52 7*****************99*************.***********76 PP | |||||||
2 | Myb_DNA-binding | 43.9 | 5.6e-14 | 105 | 149 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r Rt+ q+ s+ qky SapurV1A.0450s0110.1.p 105 PWTEEEHRLFLIGLQKYGKGDWRSISRNAVVSRTPTQVASHAQKY 149 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.608 | 1 | 58 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-11 | 4 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.54E-12 | 6 | 62 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.6E-5 | 7 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-8 | 7 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.29E-8 | 7 | 54 | No hit | No description |
PROSITE profile | PS51294 | 19.521 | 98 | 154 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-16 | 99 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 102 | 152 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-13 | 102 | 149 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-17 | 102 | 152 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 6.43E-9 | 105 | 150 | No hit | No description |
Pfam | PF00249 | 1.4E-11 | 105 | 149 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSSHFSSWSR QEDKQFEQAL VLFPEETPNR WEKISSYVPG KSWREVRKHY EDLVHDVWEI 60 DSGRVEVPIY DQDELWGEST ASLGSAAAEF RGKEREHTER RKGTPWTEEE HRLFLIGLQK 120 YGKGDWRSIS RNAVVSRTPT QVASHAQKYF LRRNSVKKEK KRSSIHDITA ATATHPMARA 180 DYDPDWNFEL VEPSVDEPMS RPASFFLDQG NPPPYQGFGF PV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-13 | 8 | 70 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0450s0110.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461788.1 | 1e-142 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 4e-57 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2K2C1N6 | 1e-140 | A0A2K2C1N6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22660.1 | 3e-91 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-75 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0450s0110.1.p |
Publications ? help Back to Top | |||
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