PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0439s0240.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 562aa    MW: 64534.1 Da    PI: 6.4373
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0439s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.84e-30122207187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             rW++qe+l+L+e+r+++++r++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qle
  SapurV1A.0439s0240.1.p 122 RWPRQETLTLLEIRSRLDSRFKEANQKGPLWDEVSRIMaEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLE 206
                             8*************************************999*****************************98..55667*******8 PP

                trihelix  87 a 87 
                             a
  SapurV1A.0439s0240.1.p 207 A 207
                             5 PP
2trihelix68.51.3e-21418503286
                trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             W + e+l  i++r++m++r+++ g ++++ Wee+++ m++ g+ r+  +Ckekwe++n ++  +++ ++k+++e+s+t  yf+qle
  SapurV1A.0439s0240.1.p 418 WAEPEILSFIQLRTSMDSRFQEnGYSNEGIWEEIAAEMASLGYDRTVDECKEKWESMNIYFNMTTTESNKKRKEDSRTSNYFQQLE 503
                             *********************84679************************************9999999999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.004115180IPR017877Myb-like domain
SMARTSM007170.4119182IPR001005SANT/Myb domain
CDDcd122039.12E-21121187No hitNo description
PfamPF138375.4E-21121208No hitNo description
SMARTSM007170.093335477IPR001005SANT/Myb domain
PROSITE profilePS500907.12410475IPR017877Myb-like domain
CDDcd122032.24E-22417482No hitNo description
PfamPF138374.8E-16417504No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MSEHHHQYGL PDLRQLVAGR THFQGTQQGG EPFFVQGRSL AAPQTHHFES IMAGHEAMLS  60
SGLVKLGGHH DRYCTNATNI NTTNSATIGA SSSAGAGTLY GVEMESATTA GWAGNDGGNN  120
SRWPRQETLT LLEIRSRLDS RFKEANQKGP LWDEVSRIMA EEHGYQRSGK KCREKFENLY  180
KYYKKTKEGK AGRQDGKHYR FFRQLEALYG EPSNQASASE THFVNNTLLY QTPMSNTINQ  240
ESQETFQENK HSESLSFSNT SEFETSSSEN NDDDLSAIAY NMMNRSTEKQ KGMNESQSLA  300
RPKKSWKLKL MEKQDAWMEK MLKTIEDREH ERMCREEEWT KQELARFDQE HEFWANERAW  360
IEARDAALME ALKKHTEKGL ELSSSVEQIA AATQRHNKNP DSAGAKKIQK DKFNNFTWAE  420
PEILSFIQLR TSMDSRFQEN GYSNEGIWEE IAAEMASLGY DRTVDECKEK WESMNIYFNM  480
TTTESNKKRK EDSRTSNYFQ QLESYNGMNS SPSNSYVGSQ VNDNSCFQVQ INEGDHHLWN  540
TNKFDLKLNK EKNQQQLWHS K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0439s0240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840630.0AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence.
GenBankAC2144190.0AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032809.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLB9HL340.0B9HL34_POPTR; Uncharacterized protein
STRINGPOPTR_0008s02580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-109Trihelix family protein