PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0396s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 413aa    MW: 47423.4 Da    PI: 6.8409
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0396s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-17173219148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g WT+eEd ll+++v ++G + W+ Ia+ ++ gR +kqc++rw+++l
  SapurV1A.0396s0170.1.p 173 KGQWTAEEDSLLIRLVDEFGIRKWSHIAQILP-GRIGKQCRERWHNHL 219
                             799*****************************.*************97 PP
2Myb_DNA-binding53.26.7e-17227267345
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              W++eEd  l++a+k+ G++ W+ Ia+ ++ gRt++++k++w+
  SapurV1A.0396s0170.1.p 227 IWSEEEDRVLIQAHKEIGNK-WAEIAKSLP-GRTENSIKNHWN 267
                             6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.182168223IPR017930Myb domain
SuperFamilySSF466891.62E-31171266IPR009057Homeodomain-like
SMARTSM007171.2E-15172221IPR001005SANT/Myb domain
PfamPF002495.4E-16173219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-28174227IPR009057Homeodomain-like
CDDcd001678.49E-15176219No hitNo description
PROSITE profilePS5129419.941224274IPR017930Myb domain
SMARTSM007175.5E-16224272IPR001005SANT/Myb domain
PfamPF002493.1E-15228267IPR001005SANT/Myb domain
CDDcd001676.83E-13228270No hitNo description
Gene3DG3DSA:1.10.10.602.3E-21228272IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MFSPDSYLNR PYMKDVFPCE TPSARSFLQD LNHLDQVHAN RSLFGVQTGS NFDSLDAFPY  60
RLSATTHLYE YDYKPYTNNS NGLYVRENFQ GGGGCWNLPQ KNLIEITGPN QSHMSLNLKE  120
IKPMNIEVLD GTPCVTTKDD CYTKGGLYKN GAMLPLTRRS GKTPTKEPNN AVKGQWTAEE  180
DSLLIRLVDE FGIRKWSHIA QILPGRIGKQ CRERWHNHLR PDIKKDIWSE EEDRVLIQAH  240
KEIGNKWAEI AKSLPGRTEN SIKNHWNATK RRQNCTSKRK SRSKYPKGSL LQEYIKSLNL  300
DSIPKVKRRQ RRRRTDKHPD AKLVSGTTMK EPSAEQTRQD LDLCENNDGP VLDYDFDEIP  360
DFDFDETIFQ DGCSIDSLLD EISCDPAVME VPRADEIPFQ DFAMMDEVGL WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-441722733104C-Myb DNA-Binding Domain
1msf_C3e-441722733104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305311VKRRQRR
2306313KRRQRRRR
3307312RRQRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0396s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383150.10.0transcription factor MYB98
SwissprotQ9S7L23e-83MYB98_ARATH; Transcription factor MYB98
TrEMBLB9MXK40.0B9MXK4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-79myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]